[Home] | [Total List]

[184533_at]

Description C17H12.8 /REP_DB=WormBase Gene ID /WP=CE19360 /TR=O45078 /GB=AAD34648.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_high_8_8 > 60      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 03_04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2854
1 2 3 4 range
A 1774.7
(1.1)
P 		1938.5
(1.5)
P 		2573.1
(3)
P 		75.6
(-3)
A 		2498
B 1840.7
(0.8)
P 		1659
(0.4)
P 		2829.3
(3)
P 		118.8
(-3)
P 		2711
C 1803.1
(0.6)
P 		1829.7
(0.6)
P 		2929.3
(3)
P 		124.6
(-3)
M 		2805
avr 1806.2
(0.8) 		1809.1
(0.8) 		2777.2
(3) 		106.3
(-3) 		2671

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2078
1 2 3 4 5 6 range
A 590.9
(-3)
P 		818
(-2.3)
P 		2004.9
(1.1)
P 		2669
(3)
P 		1130.2
(-1.4)
P 		1595.3
(-0.1)
P 		2078
B 815.9
(-2.6)
P 		717.8
(-3)
P 		2296.5
(3)
P 		2163.5
(2.5)
P 		1031.6
(-1.8)
P 		1620.6
(0.4)
P 		1579
C 662.3
(-3)
P 		690.3
(-2.9)
P 		1828.6
(0.6)
P 		2605.6
(3)
P 		1351.4
(-0.9)
P 		1846.8
(0.7)
P 		1943
avr 689.7
(-3) 		742
(-2.8) 		2043.3
(1.5) 		2479.4
(3) 		1171.1
(-1.4) 		1687.6
(0.3) 		1790
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1010
1 2 3 4 range
A 646.2
(2.8)
P 		420.8
(0.7)
P 		672.7
(3)
P 		11.1
(-3)
A 		662
B 587
(2.3)
P 		409.7
(0.7)
P 		655.6
(3)
P 		25.3
(-3)
P 		630
C 596.9
(0.5)
P 		526.1
(0)
P 		1020.9
(3)
P 		21
(-3)
M 		1000
avr 610
(1.6) 		452.2
(0.4) 		783.1
(3) 		19.1
(-3) 		764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 568
1 2 3 4 5 6 range
A 108.9
(-3)
P 		290.9
(-1.1)
P 		436.6
(0.5)
P 		676.9
(3)
P 		341
(-0.5)
P 		388.4
(-0)
P 		568
B 283.9
(-2.3)
P 		238.9
(-3)
P 		557.7
(2.2)
P 		573
(2.5)
P 		419.1
(-0)
P 		604.3
(3)
P 		365
C 245.5
(-2.5)
P 		210.6
(-3)
P 		465.4
(0.8)
P 		524
(1.6)
P 		437.3
(0.3)
P 		618.2
(3)
P 		408
avr 212.8
(-3) 		246.8
(-2.5) 		486.6
(1.3) 		591.3
(3) 		399.1
(-0) 		537
(2.1) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8955
Sequence Type Exemplar sequence
Representative Public ID C17H12.8 NCBI
Target Description C17H12.8 /REP_DB=WormBase Gene ID /WP=CE19360 /TR=O45078 /GB=AAD34648.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068647 NCBI Caenorhabditis elegans C17H12.8 (C17H12.8) mRNA, complete cds. 11/11 A 
SNAP00000015114 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6818709:6820531:1 11/11 None
GENEFINDER00000015122 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6818709:6820531:1 11/11 None
C17H12.8 ENSEMBL cdna:known chromosome:CEL140:IV:6818590:6820627:1 gene:C17H12.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6818714-6820537(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.8
Entrez Gene 177447 Entrez gene
SwissProt O45078 EMBL-EBI
WormBase CE19360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34648 Hypothetical protein C17H12.8 [Caenorhabditis elegans] ref|NP_501048.1| C17H12.8 [Caenorhabditis elegans] 0.0
blast G88711 protein C17H12.8 [imported] - Caenorhabditis elegans 1.0E-160
blast CAE61747 Hypothetical protein CBG05701 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-23
Sequence
Target Sequence 
>C. ELEGANS:184533_AT
gcgagtcaattcctacagaacaccccagacaatgatttcaaatgagagaatttcactgtc
gattgctcactccggctggtacagtgacattttcgataactattttgtaattgaaggata
cattgagaacccaaaagctgtttaccgaatgtctaagtttgtctaccaaggatacatcag
caccggaaatatcctaactgttgttggattggataatagagtatcagagagttctgttac
atttgttccactttcacaagctcaacaatatgattcatatactgcattcagtacttattt
ccaagcaaatcaattggatatggattcaactgttggagataaaaagaagaaagcagttac
tgtcatttcaatggaggatattgttttagtgattgacgttcagaagaccaacgaaccaaa
ttgtgtactgagagcagttcaatatcctccaactccatcatctgaagtatatcttgactt
cacagctgtatatgattatccgagaaacatcacccacaaatcattctgcattgtggcgga
aaactgtgcagcaactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGTCAATTCCTACAGAACACCC 195 291 468 Antisense
AGAACACCCCAGACAATGATTTCAA 709 71 484 Antisense
AGAATTTCACTGTCGATTGCTCACT 706 75 514 Antisense
TGCTCACTCCGGCTGGTACAGTGAC 661 577 531 Antisense
GAACCCAAAAGCTGTTTACCGAATG 447 167 594 Antisense
ACCGAATGTCTAAGTTTGTCTACCA 66 89 611 Antisense
TGTCTACCAAGGATACATCAGCACC 383 557 627 Antisense
GCACCGGAAATATCCTAACTGTTGT 527 315 647 Antisense
CTGTTACATTTGTTCCACTTTCACA 311 239 701 Antisense
ACATCACCCACAAATCATTCTGCAT 458 105 974 Antisense
GGCGGAAAACTGTGCAGCAACTTTC 249 499 1002 Antisense
Sequence Source Affymetrix Proprietary Database