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[184532_at]

Description W10G11.7 /REP_DB=WormBase Gene ID /WP=CE14814 /TR=O44912 /GB=AAG24216.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2
(-3)
A 		17.7
(0.6)
A 		28
(3)
A 		7.5
(-1.7)
A 		26
B 7.9
(2.7)
A 		8.2
(3)
A 		2
(-3)
A 		2.2
(-2.8)
A 		6
C 3.4
(-1.8)
A 		3.2
(-2)
A 		2.2
(-3)
A 		8.3
(3)
A 		6
avr 4.4
(-3) 		9.7
(2) 		10.7
(3) 		6
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 32.1
(3)
A 		2.1
(-2.9)
A 		13.9
(-0.6)
A 		1.6
(-3)
A 		23.9
(1.4)
A 		2.3
(-2.9)
A 		31
B 2.2
(-3)
A 		2.2
(-3)
A 		4.6
(2.5)
A 		4.8
(3)
A 		2.5
(-2.3)
A 		2.2
(-3)
A 		3
C 5.4
(-1.8)
A 		19.3
(3)
A 		2.2
(-2.9)
A 		2.7
(-2.7)
A 		1.9
(-3)
A 		12.1
(0.5)
A 		17
avr 13.2
(3) 		7.9
(-0.1) 		6.9
(-0.7) 		3
(-3) 		9.4
(0.8) 		5.5
(-1.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(-3)
A 		3.8
(-0.2)
A 		7.3
(3)
A 		1.1
(-2.6)
A 		7
B 2.5
(3)
A 		2
(1.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2
C 1.1
(0)
A 		0.9
(-2)
A 		0.8
(-3)
A 		1.4
(3)
A 		1
avr 1.4
(-1.7) 		2.2
(0.8) 		2.9
(3) 		1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.9
(1.9)
A 		0.7
(-2.7)
A 		3
(-0.7)
A 		0.4
(-3)
A 		7.2
(3)
A 		0.6
(-2.8)
A 		7
B 0.8
(-2)
A 		0.7
(-3)
A 		1.1
(1)
A 		1.3
(3)
A 		1
(0)
A 		0.8
(-2)
A 		1
C 2
(-1.4)
A 		5.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		4.1
(1)
A 		5
avr 2.9
(3) 		2.4
(1.6) 		1.6
(-0.7) 		0.8
(-3) 		2.9
(3) 		1.8
(-0.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4843
Sequence Type Exemplar sequence
Representative Public ID W10G11.7 NCBI
Target Description W10G11.7 /REP_DB=WormBase Gene ID /WP=CE14814 /TR=O44912 /GB=AAG24216.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062183 NCBI Caenorhabditis elegans W10G11.7 (W10G11.7) mRNA, complete cds. 11/11 None
SNAP00000013265 ENSEMBL cdna:SNAP chromosome:CEL140:II:3574695:3576075:-1 11/11 None
GENEFINDER00000013272 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3574695:3576075:-1 11/11 None
W10G11.7 ENSEMBL cdna:known chromosome:CEL140:II:3574695:3576075:-1 gene:W10G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3574693-3576074(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.7
Entrez Gene 189340 Entrez gene
SwissProt O44912 EMBL-EBI
WormBase CE14814 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24216 Hypothetical protein W10G11.7 [Caenorhabditis elegans] ref|NP_494584.1| W10G11.7 [Caenorhabditis elegans] 0.0
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 1.0E-125
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 1.0E-101
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 2.0E-99
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:184532_AT
attgcaccataactaactcctttgaatggactgacaactccacaactggcactgacggat
ttctgttcacacatgaacaacctgataatcactatataatgcaaagttgtgccattctct
tagcatccaaagatcctgaaattgtgttaaatggtacatatcgtgcagctacacttgacg
atgtgttcaatgaattccatgcagcaaaagctgatgctgaaagagcttgtcaagatgttg
gagccacactttcagggcttcaaaccccagaagaagcagtgtatattcaatcgtcttatc
ttgggcaagtttcacaagacattggctcgatatgggttggcgttcaacgtaaagcggatt
gtatgaatcagacaatggcagccgattgtagcaaaaataccgcattcgaatggaccgaca
attcggcaaccggcactgctggattggtttttcgaggtggaaaaactattatcacatcgt
ccgaccaaaactgtgcaaaacttctgtttttgagagcaccaattgtttccacggctccat
tggatctagtgaactgtgtcggaaactttgccccatcacttgaagatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCACCATAACTAACTCCTTTGA 174 5 443 Antisense
TGACAACTCCACAACTGGCACTGAC 216 571 474 Antisense
GGCACTGACGGATTTCTGTTCACAC 468 535 490 Antisense
TTGTGCCATTCTCTTAGCATCCAAA 52 709 549 Antisense
GCCACACTTTCAGGGCTTCAAACCC 631 275 685 Antisense
TTGGCTCGATATGGGTTGGCGTTCA 350 701 764 Antisense
TGGACCGACAATTCGGCAACCGGCA 204 545 853 Antisense
CGGCACTGCTGGATTGGTTTTTCGA 360 241 873 Antisense
AAAACTATTATCACATCGTCCGACC 87 131 904 Antisense
TGAACTGTGTCGGAAACTTTGCCCC 10 573 992 Antisense
CTTTGCCCCATCACTTGAAGATCGT 274 223 1008 Antisense
Sequence Source Affymetrix Proprietary Database