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[184531_s_at]

Description W10G11.1 /REP_DB=WormBase Gene ID /WP=CE25157 /TR=O44922 /GB=AAG24226.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 182.6
(3)
P 		107.4
(-0.5)
P 		53.4
(-3)
A 		77.9
(-1.9)
P 		129
B 172.9
(3)
P 		89.3
(-1.2)
P 		52.5
(-3)
A 		91.5
(-1.1)
P 		120
C 161.7
(3)
P 		113.6
(0.2)
M 		57
(-3)
A 		143.4
(2)
P 		105
avr 172.4
(3) 		103.4
(-0.5) 		54.3
(-3) 		104.3
(-0.5) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 108.2
(2.9)
P 		60.3
(-1.3)
A 		62.3
(-1.1)
P 		68.2
(-0.6)
A 		41.5
(-3)
A 		108.9
(3)
A 		67
B 74.4
(-0.4)
P 		37.5
(-3)
A 		81
(0)
P 		61.8
(-1.3)
A 		43.3
(-2.6)
A 		124.1
(3)
P 		87
C 90.1
(1)
P 		80.5
(-0)
P 		105.1
(2.5)
P 		64.7
(-1.7)
A 		52.2
(-3)
A 		109.4
(3)
P 		57
avr 90.9
(1) 		59.4
(-1.8) 		82.8
(0.3) 		64.9
(-1.3) 		45.7
(-3) 		114.1
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 66.5
(3)
P 		23.3
(-1.7)
P 		14
(-2.7)
A 		11.4
(-3)
P 		55
B 55.1
(3)
P 		22.1
(-1.6)
P 		12.2
(-3)
A 		19.5
(-2)
P 		43
C 53.5
(3)
P 		32.6
(-0.7)
M 		19.9
(-3)
A 		24.2
(-2.2)
P 		34
avr 58.4
(3) 		26
(-1.5) 		15.4
(-3) 		18.4
(-2.6) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 19.9
(0.2)
P 		21.5
(0.9)
A 		13.6
(-2.5)
P 		17.3
(-0.9)
A 		12.5
(-3)
A 		26.5
(3)
A 		14
B 25.9
(-0.6)
P 		12.5
(-3)
A 		19.7
(-1.7)
P 		16.4
(-2.3)
A 		17.6
(-2.1)
A 		46.3
(3)
P 		34
C 33.4
(2.2)
P 		24.6
(-0.1)
P 		26.7
(0.5)
P 		13
(-3)
A 		16.9
(-2)
A 		36.6
(3)
P 		24
avr 26.4
(0.1) 		19.5
(-1.9) 		20
(-1.7) 		15.6
(-3) 		15.7
(-3) 		36.5
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184531_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4529
Sequence Type Exemplar sequence
Representative Public ID W10G11.1 NCBI
Target Description W10G11.1 /REP_DB=WormBase Gene ID /WP=CE25157 /TR=O44922 /GB=AAG24226.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062173 NCBI Caenorhabditis elegans W10G11.1 (W10G11.1) mRNA, complete cds. 11/11 A 
W10G11.1 ENSEMBL cdna:known chromosome:CEL140:II:3559700:3560686:-1 gene:W10G11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013275 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3559698-3560685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.1
Entrez Gene 173703 Entrez gene
SwissProt O44922 EMBL-EBI
WormBase CE25157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24226 Hypothetical protein W10G11.1 [Caenorhabditis elegans] ref|NP_494574.1| W10G11.1 [Caenorhabditis elegans] 1.0E-108
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 1.0E-104
blast AAG24211 Hypothetical protein W10G11.2 [Caenorhabditis elegans] ref|NP_494575.2| W10G11.2 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.6E-77
Sequence
Target Sequence 
>C. ELEGANS:184531_S_AT
tttgtggcggcgacatctgaagccctaaattgtacaaaccctggaggtccaaaggccgtg
aaatgcttggagtcttttcatgttttcatcgaactgggtgacaacgcaaaaggcttcaat
atctccaacaaaaccagcaccacaaaaatgatcgaaaactgtggaaagttcaaccgttgc
cgccgcacactcgattgcctgatcgaacaaaaattcgtctacgctgtcaacataaccctc
atgttctgcgataccgttcagttcttctcaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGGCGGCGACATCTGAAGCCC 432 663 43 Antisense
GAAGCCCTAAATTGTACAAACCCTG 465 343 61 Antisense
GGAGGTCCAAAGGCCGTGAAATGCT 361 513 85 Antisense
GAACTGGGTGACAACGCAAAAGGCT 527 347 133 Antisense
AAAAGGCTTCAATATCTCCAACAAA 25 133 150 Antisense
AAACCAGCACCACAAAAATGATCGA 537 125 173 Antisense
CTGTGGAAAGTTCAACCGTTGCCGC 233 241 201 Antisense
CGCACACTCGATTGCCTGATCGAAC 234 253 226 Antisense
TCGTCTACGCTGTCAACATAACCCT 379 605 257 Antisense
ACATAACCCTCATGTTCTGCGATAC 596 89 272 Antisense
GATACCGTTCAGTTCTTCTCAAAAC 125 423 292 Antisense
Sequence Source Affymetrix Proprietary Database