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[184530_at]

Description W10G11.1 /REP_DB=WormBase Gene ID /WP=CE25157 /TR=O44922 /GB=AAG24226.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 69.5
(3)
M 		31.7
(-0.6)
A 		7.1
(-3)
A 		31.2
(-0.7)
A 		62
B 45.1
(2.8)
A 		46.5
(3)
A 		6.2
(-3)
A 		12.8
(-2)
A 		40
C 63.3
(3)
P 		8.3
(-3)
A 		34.9
(-0.1)
A 		37.2
(0.2)
A 		55
avr 59.3
(3) 		28.8
(-1.2) 		16.1
(-3) 		27.1
(-1.5) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 22.5
(-0.8)
A 		2.2
(-3)
A 		21.2
(-0.9)
A 		2.9
(-2.9)
A 		3.6
(-2.8)
A 		56.8
(3)
A 		55
B 18.9
(-0.9)
A 		6.8
(-2.4)
A 		13.7
(-1.6)
A 		19.2
(-0.9)
A 		2.2
(-3)
A 		49.8
(3)
A 		48
C 33.8
(-0)
A 		6.6
(-2.7)
A 		4.8
(-2.9)
A 		64.8
(3)
A 		3.5
(-3)
A 		45.2
(1.1)
A 		61
avr 25.1
(-0.2) 		5.2
(-2.7) 		13.2
(-1.7) 		29
(0.3) 		3.1
(-3) 		50.6
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.3
(3)
M 		6.9
(-1.7)
A 		1.8
(-3)
A 		4.6
(-2.3)
A 		24
B 14.4
(3)
A 		11.5
(1.7)
A 		1.4
(-3)
A 		2.7
(-2.4)
A 		13
C 21
(3)
P 		2.4
(-3)
A 		12.2
(0.2)
A 		6.3
(-1.7)
A 		19
avr 20.2
(3) 		6.9
(-2.1) 		5.1
(-2.8) 		4.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.1
(-1.4)
A 		0.8
(-3)
A 		4.6
(-1.2)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		13.8
(3)
A 		13
B 6.6
(-1.1)
A 		2.3
(-2.5)
A 		3.3
(-2.2)
A 		5.1
(-1.6)
A 		0.9
(-3)
A 		18.6
(3)
A 		18
C 12.5
(1.9)
A 		2
(-2.6)
A 		1.2
(-3)
A 		13
(2.1)
A 		1.1
(-3)
A 		15.1
(3)
A 		14
avr 7.7
(-0.3) 		1.7
(-2.7) 		3
(-2.2) 		6.3
(-0.9) 		1
(-3) 		15.8
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4529
Sequence Type Exemplar sequence
Representative Public ID W10G11.1 NCBI
Target Description W10G11.1 /REP_DB=WormBase Gene ID /WP=CE25157 /TR=O44922 /GB=AAG24226.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062173 NCBI Caenorhabditis elegans W10G11.1 (W10G11.1) mRNA, complete cds. 11/11 A 
W10G11.1 ENSEMBL cdna:known chromosome:CEL140:II:3559700:3560686:-1 gene:W10G11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013256 5/11 Cross Hyb Matching Probes None
GENEFINDER00000013275 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3559698-3560685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.1
Entrez Gene 173703 Entrez gene
SwissProt O44922 EMBL-EBI
WormBase CE25157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24226 Hypothetical protein W10G11.1 [Caenorhabditis elegans] ref|NP_494574.1| W10G11.1 [Caenorhabditis elegans] 1.0E-108
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 1.0E-104
blast AAG24211 Hypothetical protein W10G11.2 [Caenorhabditis elegans] ref|NP_494575.2| W10G11.2 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.6E-77
Sequence
Target Sequence 
>C. ELEGANS:184530_AT
gtttgtaacatttctgactattctgatatttgtggcggcgacatctgaagccctaaattg
tacaaaccctggaggtccaaaggccgtgaaatgcttggagtcttttcatgttttcatcga
actgggtgacaacgcaaaaggcttcaatatctccaacaaaaccagcaccacaaaaatgat
cgaaaactgtggaaagttcaaccgttgccgccgcacactcgattgcctgatcgaacaaaa
attcgtctacgctgtcaacataaccctcatgttctgcgataccgttcagttcttctcaaa
acagtttatcccttgccaaatactactagacgctagagcatcagagtgctctaaaaactg
gaatccctacccgaaagagattccggataaggtgaaaatggcagagattcagaaagtggc
gtgtgagaactttttcgggaagcatgggtgcatgcagaaggagatcacggagacatgtgg
agcagagatgtggaccgggttcaagaagaataatctagcactcaacacaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTAACATTTCTGACTATTCTG 242 451 15 Antisense
TGCTTGGAGTCTTTTCATGTTTTCA 602 577 106 Antisense
GTCTTTTCATGTTTTCATCGAACTG 297 469 114 Antisense
CTCAAAACAGTTTATCCCTTGCCAA 32 227 309 Antisense
ATCCCTTGCCAAATACTACTAGACG 654 37 322 Antisense
ACTAGACGCTAGAGCATCAGAGTGC 577 101 339 Antisense
ACTGGAATCCCTACCCGAAAGAGAT 132 97 371 Antisense
GTGGCGTGTGAGAACTTTTTCGGGA 36 491 430 Antisense
ACTTTTTCGGGAAGCATGGGTGCAT 678 101 443 Antisense
GAGCAGAGATGTGGACCGGGTTCAA 556 389 494 Antisense
GAATAATCTAGCACTCAACACAATA 279 327 522 Antisense
Sequence Source Affymetrix Proprietary Database