[Home] | [Total List]

[184527_at]

Description H09I01.1 /REP_DB=WormBase Gene ID /WP=CE23799 /TR=Q9N5N6 /GB=AAF39872.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 10
(-1.4)
A 		19.3
(3)
A 		6.7
(-3)
A 		18.8
(2.8)
A 		13
B 10.5
(-1.5)
A 		5.6
(-2.9)
A 		5.3
(-3)
A 		26.7
(3)
A 		21
C 38.2
(-0.1)
A 		3
(-3)
A 		16.9
(-1.8)
A 		75.1
(3)
A 		72
avr 19.6
(-1) 		9.3
(-3) 		9.6
(-2.9) 		40.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 56.7
(3)
A 		23.2
(-0.8)
A 		5.2
(-2.9)
A 		4.1
(-3)
A 		43.9
(1.5)
A 		4.9
(-2.9)
A 		53
B 6.2
(-2.9)
A 		36.4
(3)
A 		14.1
(-1.4)
A 		5.9
(-3)
A 		6.9
(-2.8)
A 		13.4
(-1.5)
A 		31
C 4.4
(-3)
A 		4.4
(-3)
A 		6
(-2.6)
A 		27.4
(2.5)
A 		5.1
(-2.8)
A 		29.4
(3)
A 		25
avr 22.4
(3) 		21.3
(2.5) 		8.4
(-3) 		12.5
(-1.2) 		18.6
(1.4) 		15.9
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.7
(1.8)
A 		4.2
(3)
A 		1.7
(-3)
A 		2.8
(-0.4)
A 		3
B 3.3
(-0.2)
A 		1.4
(-2.7)
A 		1.2
(-3)
A 		5.7
(3)
A 		5
C 12.6
(2.9)
A 		0.9
(-3)
A 		5.9
(-0.5)
A 		12.7
(3)
A 		12
avr 6.5
(2.3) 		2.2
(-3) 		2.9
(-2.1) 		7.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.4
(1.6)
A 		8.2
(0.5)
A 		1.1
(-3)
A 		1
(-3)
A 		13.2
(3)
A 		1.2
(-2.9)
A 		12
B 2.1
(-2.7)
A 		12.1
(3)
A 		3.4
(-2)
A 		1.6
(-3)
A 		2.8
(-2.3)
A 		5
(-1.1)
A 		11
C 1.6
(-2.8)
A 		1.3
(-3)
A 		1.5
(-2.9)
A 		5.5
(-0)
A 		1.7
(-2.7)
A 		9.8
(3)
A 		9
avr 4.7
(0.1) 		7.2
(3) 		2
(-3) 		2.7
(-2.2) 		5.9
(1.5) 		5.3
(0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8863
Sequence Type Exemplar sequence
Representative Public ID H09I01.1 NCBI
Target Description H09I01.1 /REP_DB=WormBase Gene ID /WP=CE23799 /TR=Q9N5N6 /GB=AAF39872.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068983 NCBI Caenorhabditis elegans H09I01.1 (H09I01.1) mRNA, complete cds. 11/11 None
H09I01.1 ENSEMBL cdna:known chromosome:CEL140:IV:8258798:8259367:1 gene:H09I01.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8258803-8259373(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H09I01.1
Entrez Gene 186711 Entrez gene
SwissProt Q9N5N6 EMBL-EBI
WormBase CE23799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39872 Hypothetical protein H09I01.1 [Caenorhabditis elegans] ref|NP_501384.1| H09I01.1 [Caenorhabditis elegans] 4.0E-45
blast NP_495217 F21H12.3 [Caenorhabditis elegans] gb|AAC46715.2| Hypothetical protein F21H12.3 [Caenorhabditis elegans] sp|Q09311|YQS3_CAEEL Hypothetical protein F21H12.3 in chromosome II 4.0E-16
blast CAA22073 Hypothetical protein Y49A3A.1 [Caenorhabditis elegans] ref|NP_506558.1| Y49A3A.1 [Caenorhabditis elegans] 6.0E-16
Sequence
Target Sequence 
>C. ELEGANS:184527_AT
tgaaggccaaaattagttttattcgcaaattccaaatcggagtcaacgttgatttgatca
gcttatccgcaaactgcaccttctttccattgggcttctcaacaattttccgctcttctg
ggactgttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGCCAAAATTAGTTTTATTCG 27 571 116 Antisense
GTTTTATTCGCAAATTCCAAATCGG 163 449 131 Antisense
ATTCCAAATCGGAGTCAACGTTGAT 453 1 144 Antisense
GGAGTCAACGTTGATTTGATCAGCT 348 513 154 Antisense
GTTGATTTGATCAGCTTATCCGCAA 67 439 163 Antisense
GATCAGCTTATCCGCAAACTGCACC 668 419 171 Antisense
TCAGCTTATCCGCAAACTGCACCTT 351 625 173 Antisense
TTCTTTCCATTGGGCTTCTCAACAA 276 691 196 Antisense
ATTGGGCTTCTCAACAATTTTCCGC 331 3 204 Antisense
TCAACAATTTTCCGCTCTTCTGGGA 553 629 214 Antisense
TTTCCGCTCTTCTGGGACTGTTAAT 396 669 222 Antisense
Sequence Source Affymetrix Proprietary Database