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[184526_at]

Description Y71A12B.4 /REP_DB=WormBase Gene ID /WP=CE26238 /TR=Q9GRV5 /GB=CAC14420.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 31      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 41
(3)
A 		9.4
(-3)
A 		13.3
(-2.3)
A 		27.8
(0.5)
A 		32
B 80.3
(3)
A 		13.9
(-2.7)
A 		10.3
(-3)
A 		48
(0.2)
A 		70
C 29
(3)
A 		15.6
(-0.1)
A 		7.7
(-1.9)
A 		3
(-3)
A 		26
avr 50.1
(3) 		13
(-2.6) 		10.4
(-3) 		26.3
(-0.6) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		19.4
(3)
A 		2.1
(-3)
A 		7.9
(-1)
A 		8
(-1)
A 		3.9
(-2.4)
A 		17
B 43.1
(3)
A 		13.4
(-1.4)
A 		24.7
(0.3)
A 		2.5
(-3)
A 		8.2
(-2.2)
A 		4.5
(-2.7)
A 		41
C 47.9
(3)
A 		8.9
(-2.1)
A 		2.8
(-2.9)
A 		4.8
(-2.7)
A 		3
(-2.9)
A 		2.2
(-3)
A 		46
avr 31.4
(3) 		13.9
(-0.8) 		9.9
(-1.6) 		5.1
(-2.7) 		6.4
(-2.4) 		3.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.9
(3)
A 		2
(-3)
A 		3.5
(-2.3)
A 		4.1
(-2)
A 		13
B 25.6
(3)
A 		3.4
(-2.7)
A 		2.4
(-3)
A 		10.2
(-1)
A 		23
C 9.6
(3)
A 		4.5
(-0.4)
A 		2.7
(-1.5)
A 		0.5
(-3)
A 		9
avr 16.7
(3) 		3.3
(-2.8) 		2.9
(-3) 		4.9
(-2.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		6.9
(3)
A 		0.5
(-3)
A 		2
(-1.6)
A 		2.4
(-1.2)
A 		0.9
(-2.6)
A 		6
B 15
(3)
A 		4.4
(-1.4)
A 		6
(-0.8)
A 		0.7
(-3)
A 		3.3
(-1.9)
A 		1.7
(-2.6)
A 		14
C 17.7
(3)
A 		2.7
(-2.3)
A 		0.7
(-3)
A 		1
(-2.9)
A 		1
(-2.9)
A 		0.7
(-3)
A 		17
avr 11.1
(3) 		4.7
(-0.8) 		2.4
(-2.2) 		1.2
(-2.9) 		2.2
(-2.3) 		1.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1854
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.4 NCBI
Target Description Y71A12B.4 /REP_DB=WormBase Gene ID /WP=CE26238 /TR=Q9GRV5 /GB=CAC14420.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061028 NCBI Caenorhabditis elegans TRP (transient receptor potential) channel family member (trp-4) (trp-4) mRNA, complete cds. 11/11 None
GENEFINDER00000038403 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13910334:13921972:1 11/11 None
Y71A12B.4 ENSEMBL cdna:known chromosome:CEL140:I:13910334:13921972:1 gene:Y71A12B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038362 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13910264-13921903(+) 98.5 100.0
Public Domain and Genome References
Gene Title
Gene Symbol trp-4
Ensembl Y71A12B.4
Entrez Gene 190574 Entrez gene
SwissProt Q9GRV5 EMBL-EBI
WormBase CE26238 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6816 calcium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5262 calcium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14420 Hypothetical protein Y71A12B.4 [Caenorhabditis elegans] ref|NP_493429.1| TRP (transient receptor potential) channel family member (trp-4) [Caenorhabditis elegans] 0.0
blast CAE68006 Hypothetical protein CBG13617 [Caenorhabditis briggsae] 0.0
blast CAE09056 putative transient receptor potential channel [Xenopus laevis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.059
Pfam IPR002110 EMBL-EBI Ankyrin 0.0031
Pfam IPR002110 EMBL-EBI Ankyrin 2.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-4
Pfam IPR002110 EMBL-EBI Ankyrin 3.9E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-4
Pfam IPR002110 EMBL-EBI Ankyrin 4.9E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002110 EMBL-EBI Ankyrin 4.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.024
Pfam IPR002110 EMBL-EBI Ankyrin 3.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.081
Pfam IPR002110 EMBL-EBI Ankyrin 5.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-9
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 5.9E-9
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0023
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.14
Pfam IPR002110 EMBL-EBI Ankyrin 0.0044
Pfam IPR002110 EMBL-EBI Ankyrin 2.6E-10
Pfam IPR002110 EMBL-EBI Ankyrin 0.012
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-11
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.0014
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493429.1 7 1448-1470,1483-1505,1525-1547,1554-1576,1599-1621,1634-1656,1708-1730
Y71A12B.4 7 1448-1470,1483-1505,1525-1547,1554-1576,1599-1621,1634-1656,1708-1730
GENEFINDER00000038403 7 1448-1470,1483-1505,1525-1547,1554-1576,1599-1621,1634-1656,1708-1730
Sequence
Target Sequence 
>C. ELEGANS:184526_AT
gatggtcaccttgattgtgctgatcaacttgctgattgctatgatgtctgacacctacca
acgaattcaggcacagtcggataaggaatggaagttcggaagagctattctgatcagaca
gatgaataagaaaagcgccacgccgtcgccgataaatatgttaacaaagttgataattgt
gctgagggtagcctggcggaatcggtatatttttcaaaaaaatttcccaggcttatgctt
cggcctaggcttaggcttaagttcaggcttaggcttagacccaagttctcaagatccaaa
attcgaatttccagtgagatgcatgacccgaaaagcccaagacgatcttcgcttcgagga
gaacatcgacgcgttctccatgggtggcggccagcagggaaggcaaagtccgaccaatga
aggaagagaaggccagcaagagcttggtaactcggctgactggaacatcgagacagtcat
cgactggaggaagattgtttcaatgtactatcaggcgaatgggaagcttacagacgggcg
aaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCACCTTGATTGTGCTGATC 30 409 5166 Antisense
GCTGATTGCTATGATGTCTGACACC 549 295 5196 Antisense
GACACCTACCAACGAATTCAGGCAC 24 369 5215 Antisense
GGGTAGCCTGGCGGAATCGGTATAT 294 495 5351 Antisense
AAAATTTCCCAGGCTTATGCTTCGG 250 133 5384 Antisense
GGCTTAGGCTTAGACCCAAGTTCTC 576 1 5431 Antisense
GAGATGCATGACCCGAAAAGCCCAA 183 397 5481 Antisense
AAAGCCCAAGACGATCTTCGCTTCG 398 125 5497 Antisense
TCCATGGGTGGCGGCCAGCAGGGAA 378 587 5542 Antisense
TGGTAACTCGGCTGACTGGAACATC 583 549 5610 Antisense
GGAAGCTTACAGACGGGCGAACCAA 314 531 5687 Antisense
Sequence Source Affymetrix Proprietary Database