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[184525_at]

Description C17H12.2 /REP_DB=WormBase Gene ID /WP=CE16863 /TR=O45086 /GB=AAC02581.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 33.2
(-0.3)
A 		13
(-3)
A 		44.2
(1.2)
A 		57.7
(3)
A 		45
B 8.2
(-3)
A 		34.1
(0.6)
A 		45.6
(2.2)
A 		51.2
(3)
A 		43
C 40.8
(3)
A 		23.8
(-3)
A 		30.1
(-0.8)
A 		29.2
(-1.1)
A 		17
avr 27.4
(-2) 		23.6
(-3) 		40
(1.4) 		46
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 10
(-3)
A 		45.9
(2.9)
A 		46.5
(3)
A 		32.1
(0.6)
A 		37.6
(1.5)
A 		15.7
(-2.1)
A 		37
B 14.5
(-3)
A 		20.9
(-1.9)
A 		45.2
(2.1)
A 		50.5
(3)
A 		49
(2.8)
A 		36.7
(0.7)
A 		36
C 7.6
(-3)
A 		48.8
(1.1)
A 		8.4
(-2.9)
A 		36.9
(-0.1)
A 		51.8
(1.4)
A 		68.3
(3)
A 		61
avr 10.7
(-3) 		38.5
(1.7) 		33.4
(0.8) 		39.8
(1.9) 		46.1
(3) 		40.2
(2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.1
(3)
A 		2.8
(-3)
A 		11.6
(2.7)
A 		8.4
(0.6)
A 		9
B 2.6
(-3)
A 		8.4
(1.2)
A 		10.6
(2.8)
A 		10.9
(3)
A 		8
C 13.5
(3)
A 		6.9
(-1.6)
A 		10.5
(0.9)
A 		4.9
(-3)
A 		9
avr 9.4
(1.2) 		6
(-3) 		10.9
(3) 		8.1
(-0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.9
(-3)
A 		16.3
(3)
A 		10.1
(0.4)
A 		8.1
(-0.4)
A 		11.3
(0.9)
A 		3.8
(-2.2)
A 		14
B 5.1
(-3)
A 		7
(-2.2)
A 		11
(-0.6)
A 		13.4
(0.4)
A 		19.9
(3)
A 		13.7
(0.5)
A 		15
C 2.8
(-2.8)
A 		14.9
(0.7)
A 		2.1
(-3)
A 		7.4
(-1.5)
A 		16.8
(1.2)
A 		22.9
(3)
A 		21
avr 3.3
(-3) 		12.7
(1.4) 		7.7
(-0.9) 		9.6
(-0) 		16
(3) 		13.5
(1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8826
Sequence Type Exemplar sequence
Representative Public ID C17H12.2 NCBI
Target Description C17H12.2 /REP_DB=WormBase Gene ID /WP=CE16863 /TR=O45086 /GB=AAC02581.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068638 NCBI Caenorhabditis elegans C17H12.2 (C17H12.2) mRNA, complete cds. 11/11 None
SNAP00000015105 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6787404:6789539:-1 11/11 None
GENEFINDER00000015124 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6787404:6789605:-1 11/11 None
C17H12.2 ENSEMBL cdna:known chromosome:CEL140:IV:6786842:6789605:-1 gene:C17H12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6787409-6789611(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.2
Entrez Gene 177441 Entrez gene
SwissProt O45086 EMBL-EBI
WormBase CE16863 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592914_S_AT similar to CG7289-PA cfa
CANINE_2:CFA.275.1.A1_AT similar to CG7289-PA cfa
CANINE_2:CFAAFFX.25294.1.S1_AT similar to CG7289-PA cfa
DROSOPHILA_2:1641097_AT dm
DROSGENOME1:153750_AT dm
CHICKEN:GGAAFFX.2797.1.S1_AT similar to RIKEN cDNA 2510039O18 gga
HU35KSUBA:AA203111_AT KIAA2013 hs
HU35KSUBA:RC_AA291551_AT KIAA2013 hs
HU35KSUBA:RC_AA284976_AT KIAA2013 hs
HU35KSUBD:RC_T46915_F_AT KIAA2013 hs
U133_X3P:HS2.110906.2.S1_3P_AT KIAA2013 hs
U133_X3P:HS.110906.0.S2_3P_AT KIAA2013 hs
U133_X3P:HS.110906.0.S1_3P_AT KIAA2013 hs
HG-U133_PLUS_2:1555933_AT KIAA2013 hs
HG-U133_PLUS_2:224706_AT KIAA2013 hs
HG-U133B:224706_AT KIAA2013 hs
HG-U133_PLUS_2:224708_AT KIAA2013 hs
HG-U133B:224708_AT KIAA2013 hs
HG-U95E:85758_AT KIAA2013 hs
HG-U95D:89388_AT KIAA2013 hs
HG-U95D:72181_I_AT KIAA2013 hs
HG-U95D:72183_F_AT KIAA2013 hs
MOUSE430A_2:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MOE430A:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430_2:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MU11KSUBB:MSA.13280.0_S_AT RIKEN cDNA 2510039O18 gene mm
MG-U74AV2:96325_AT RIKEN cDNA 2510039O18 gene mm
MOE430A:1451078_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430A_2:1451078_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430_2:1451078_AT RIKEN cDNA 2510039O18 gene mm
MG-U74AV2:162292_R_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
MU19KSUBC:TC39152_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
MU11KSUBA:D18902_RC_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
RG-U34C:RC_AI180416_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
RAE230A:1371654_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
RAT230_2:1371654_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC02581 Hypothetical protein C17H12.2 [Caenorhabditis elegans] ref|NP_501039.1| C17H12.2 [Caenorhabditis elegans] 0.0
blast CAE61479 Hypothetical protein CBG05373 [Caenorhabditis briggsae] 0.0
blast EAL34010 GA20240-PA [Drosophila pseudoobscura] 6.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501039.1 2 34-53,541-563
C17H12.2 2 34-53,541-563
SNAP00000015105 2 12-31,499-521
GENEFINDER00000015124 2 34-53,541-563
Sequence
Target Sequence 
>C. ELEGANS:184525_AT
gggtgttgttggtactattcgagtggatataaaattggatacggaaaatcgtccttattt
tatggtttcatcttctagtcaattatttgtttgtgatggtggatgcctcgatagcccagt
ttcacttggaaagactccagttcaattaccagtaaaagtcacgaaaccagtaacatctct
tctctacattgctccatctcgacgacatcttgaactcctaagaaatgccattcacgtgtc
ggaagttggtgcagcaccggcacacgaagaagaagttattgaaatgcatcgatctggaga
atcaactggaggaatgacaacattctgggtgttcgtttttgttgtcgtcgtcgcttttca
tctggttgtcgccaaaatcgtttggagcgaatggagaaaaggcgatatgacaccctataa
tccgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTTGTTGGTACTATTCGAGTG 99 497 1320 Antisense
TCGTCCTTATTTTATGGTTTCATCT 227 605 1368 Antisense
TGTGATGGTGGATGCCTCGATAGCC 441 555 1411 Antisense
CCTCGATAGCCCAGTTTCACTTGGA 554 267 1425 Antisense
GAAAGACTCCAGTTCAATTACCAGT 299 359 1448 Antisense
GAAACCAGTAACATCTCTTCTCTAC 50 359 1482 Antisense
GCTCCATCTCGACGACATCTTGAAC 257 299 1510 Antisense
GAAATGCCATTCACGTGTCGGAAGT 481 361 1541 Antisense
GAAGTTGGTGCAGCACCGGCACACG 214 337 1561 Antisense
TCTGGGTGTTCGTTTTTGTTGTCGT 2 609 1643 Antisense
GATATGACACCCTATAATCCGTATT 30 425 1723 Antisense
Sequence Source Affymetrix Proprietary Database