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[184524_at]

Description W06E11.1 /REP_DB=WormBase Gene ID /WP=CE01426 /TR=Q23206 /GB=AAK29861.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 17.9
(-1.5)
A 		50.2
(3)
A 		19.1
(-1.3)
A 		7.3
(-3)
A 		43
B 25.9
(1.6)
A 		7.2
(-2.4)
A 		4.2
(-3)
A 		32.6
(3)
P 		28
C 17.6
(2.8)
A 		4
(-2.5)
A 		2.6
(-3)
A 		18
(3)
A 		15
avr 20.5
(3) 		20.5
(3) 		8.6
(-3) 		19.3
(2.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 26.1
(3)
A 		1.5
(-3)
A 		15.5
(0.4)
A 		6.1
(-1.9)
A 		13.2
(-0.1)
A 		19.7
(1.4)
A 		25
B 13.8
(1.6)
A 		5.2
(-3)
A 		5.3
(-2.9)
A 		16.5
(3)
A 		15.3
(2.4)
A 		11.1
(0.1)
A 		11
C 3.5
(-2.2)
A 		2.5
(-2.7)
A 		4.7
(-1.6)
A 		14
(3)
A 		2.7
(-2.6)
A 		1.9
(-3)
A 		12
avr 14.5
(3) 		3.1
(-3) 		8.5
(-0.2) 		12.2
(1.8) 		10.4
(0.8) 		10.9
(1.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.5
(0.3)
A 		10.9
(3)
A 		5
(-0.6)
A 		1.1
(-3)
A 		10
B 8.3
(3)
A 		1.8
(-2.3)
A 		1
(-3)
A 		7
(1.9)
P 		7
C 5.8
(3)
A 		1.2
(-2.6)
A 		0.9
(-3)
A 		3
(-0.4)
A 		5
avr 6.9
(3) 		4.6
(-0) 		2.3
(-3) 		3.7
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.8
(3)
A 		0.5
(-3)
A 		3.4
(1)
A 		1.5
(-1.6)
A 		4
(1.9)
A 		4.8
(3)
A 		4
B 4.8
(1.3)
A 		1.7
(-2.5)
A 		1.3
(-3)
A 		4.4
(0.8)
A 		6.2
(3)
A 		4.1
(0.4)
A 		5
C 1.3
(-1.1)
A 		0.7
(-2.7)
A 		1.2
(-1.4)
A 		2.8
(3)
A 		0.9
(-2.2)
A 		0.6
(-3)
A 		2
avr 3.6
(2.8) 		1
(-3) 		2
(-0.8) 		2.9
(1.2) 		3.7
(3) 		3.2
(1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8338
Sequence Type Exemplar sequence
Representative Public ID W06E11.1 NCBI
Target Description W06E11.1 /REP_DB=WormBase Gene ID /WP=CE01426 /TR=Q23206 /GB=AAK29861.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064828 NCBI Caenorhabditis elegans W06E11.1 (W06E11.1) mRNA, complete cds. 11/11 None
SNAP00000038892 ENSEMBL cdna:SNAP chromosome:CEL140:III:642069:645526:1 11/11 None
GENEFINDER00000038898 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:642069:645526:1 11/11 None
W06E11.1 ENSEMBL cdna:known chromosome:CEL140:III:642069:645526:1 gene:W06E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:642068-645526(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06E11.1
Entrez Gene 189252 Entrez gene
SwissProt Q23206 EMBL-EBI
WormBase CE01426 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6350 transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3899 DNA-directed RNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29861 Hypothetical protein W06E11.1 [Caenorhabditis elegans] ref|NP_497229.1| W06E11.1 [Caenorhabditis elegans] 0.0
blast CAE69213 Hypothetical protein CBG15253 [Caenorhabditis briggsae] 0.0
blast AAH72054 MGC78924 protein [Xenopus laevis] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR006886 EMBL-EBI Sin-like protein conserved region 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184524_AT
atcttccggatccaaaccttcaattaaaggcgcatatggtgaaatctcacgtgatgaaga
cttctgaaatgcgtcgtttaatcgatccatccgcaatgagcactgataaaatgattgcga
agctcaaggaatgcgcgagtttagttcaaggcgtctgggtgttggattcgaatttaatgt
tcaaaaatttggcgccggcgcactcgaatacggcgggaaagacggatttgtatcgggcag
agctttggagaaacgcgcgagatttggcactttgcctgattgatggtggtcatagagtca
ctcggcttactcttatgacatgctttaagctcagcgaacgggattccgatgaaattttgt
cgacttttggtgtcaaatgtgaagctaccagatcatggagacttcgcgtcgaacgggatg
ctcagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCCGGATCCAAACCTTCAATT 517 25 917 Antisense
ATGCGTCGTTTAATCGATCCATCCG 38 43 985 Antisense
GATCCATCCGCAATGAGCACTGATA 595 415 1000 Antisense
GCGAGTTTAGTTCAAGGCGTCTGGG 164 287 1051 Antisense
AGGCGTCTGGGTGTTGGATTCGAAT 340 17 1065 Antisense
CGGCGCACTCGAATACGGCGGGAAA 301 239 1112 Antisense
AACGCGCGAGATTTGGCACTTTGCC 704 145 1168 Antisense
GAGTCACTCGGCTTACTCTTATGAC 418 399 1211 Antisense
TAAGCTCAGCGAACGGGATTCCGAT 439 637 1242 Antisense
ACCAGATCATGGAGACTTCGCGTCG 296 83 1303 Antisense
GCGTCGAACGGGATGCTCAGTTTTT 132 289 1322 Antisense
Sequence Source Affymetrix Proprietary Database