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[184523_at] 7TM chemoreceptor, srw family

Description ZC204.15 /REP_DB=WormBase Gene ID /WP=CE15112 /TR=P91549 /GB=AAB37921.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 18      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 41
(-3)
A 		61
(-0.9)
A 		54.7
(-1.6)
M 		99.4
(3)
P 		58
B 47.7
(-3)
P 		52.9
(1.2)
A 		55.1
(3)
A 		49.3
(-1.7)
A 		7
C 65.7
(-1.1)
P 		76.2
(-0.1)
A 		46.7
(-3)
A 		108.2
(3)
P 		62
avr 51.5
(-3) 		63.4
(-0.9) 		52.2
(-2.9) 		85.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 63.7
(2.5)
A 		47.4
(0.7)
A 		68.1
(3)
A 		48.4
(0.8)
P 		61.6
(2.3)
M 		15
(-3)
A 		53
B 61.4
(2.5)
P 		59.8
(2.1)
P 		64
(3)
P 		53.6
(0.8)
A 		51
(0.3)
A 		35.1
(-3)
P 		29
C 26.2
(-3)
A 		67
(1.4)
P 		58.6
(0.5)
P 		81.7
(3)
P 		34.7
(-2.1)
A 		44.5
(-1)
P 		56
avr 50.4
(0.5) 		58.1
(2) 		63.6
(3) 		61.2
(2.6) 		49.1
(0.3) 		31.5
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 14.9
(3)
A 		13.2
(-3)
A 		14.3
(0.9)
M 		14.6
(1.9)
P 		2
B 15.2
(3)
P 		13.1
(0.3)
A 		12.8
(-0.1)
A 		10.5
(-3)
A 		5
C 21.7
(2.8)
P 		21.9
(3)
A 		16.3
(-3)
A 		18.2
(-1)
P 		6
avr 17.3
(3) 		16.1
(0.5) 		14.5
(-2.8) 		14.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.7
(0.2)
A 		16.8
(2.3)
A 		14.8
(1.5)
A 		12.3
(0.5)
P 		18.6
(3)
M 		3.6
(-3)
A 		15
B 21.4
(3)
P 		19.9
(1.9)
P 		15.5
(-1.3)
P 		14.2
(-2.2)
A 		20.7
(2.5)
A 		13.1
(-3)
P 		8
C 9.7
(-3)
A 		20.4
(3)
P 		14.9
(-0.1)
P 		16.4
(0.8)
P 		11.2
(-2.2)
A 		14.9
(-0.1)
P 		11
avr 14.3
(-0.3) 		19
(3) 		15.1
(0.2) 		14.3
(-0.3) 		16.8
(1.4) 		10.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4300
Sequence Type Exemplar sequence
Representative Public ID ZC204.15 NCBI
Target Description ZC204.15 /REP_DB=WormBase Gene ID /WP=CE15112 /TR=P91549 /GB=AAB37921.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061633 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-97) (srw-97) mRNA, complete cds. 11/11 None
SNAP00000031418 ENSEMBL cdna:SNAP chromosome:CEL140:II:1661921:1670058:-1 10/11 None
GENEFINDER00000031422 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1667525:1669016:-1 11/11 None
ZC204.15 ENSEMBL cdna:known chromosome:CEL140:II:1667525:1669016:-1 gene:ZC204.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1667523-1669015(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-97
Ensembl ZC204.15
Entrez Gene 191118 Entrez gene
SwissProt P91549 EMBL-EBI
WormBase CE15112 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 0.0
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 1.0E-135
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 1.0E-98
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 3.0E-83
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 1.0E-80
blast CAE62422 Hypothetical protein CBG06512 [Caenorhabditis briggsae] 1.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494034.1 7 38-60,67-89,128-147,160-182,232-254,280-302,317-339
ZC204.15 7 38-60,67-89,128-147,160-182,232-254,280-302,317-339
SNAP00000031418 7 10-27,34-56,95-114,127-149,181-198,211-233,248-270
GENEFINDER00000031422 7 38-60,67-89,128-147,160-182,232-254,280-302,317-339
Sequence
Target Sequence 
>C. ELEGANS:184523_AT
tttttggtgcttcctgtttagcgcttttttctctctggtctattattttcgttatgattt
tgtactgaaaaaggatccatggcagccgaaggatcactgcaccgatgtggaccattcctt
aaaacttgatgcattcactcaaaagttagcatatattttcacagtttatggtggtattct
tgggaagatttatcagctggtgaatgggattttgtcgaaaatccttccctgcatcctcct
acctatcctaaccatcctgctcattttggagctccggaaagccgaaaagaatcggaaaaa
ctcaaataccaacgccaaaaagttgacatctgaaaaaacaacaggcctcgtgatattcat
gacaatctcttttttccttctggagctcccaataggcatcggcctagtttttcaagtggc
ctatactgatttcggatatctatattttgccacatatgtcaatcacctagttaactcaat
ttgtataatcaatgctttaacccatggagctgtaatgttctccatgtcaagccaatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTGGTGCTTCCTGTTTAGCGCT 687 673 507 Antisense
TTTTCTCTCTGGTCTATTATTTTCG 415 677 533 Antisense
GCAGCCGAAGGATCACTGCACCGAT 463 311 588 Antisense
TGCACCGATGTGGACCATTCCTTAA 27 579 604 Antisense
TCCTAACCATCCTGCTCATTTTGGA 301 591 752 Antisense
AACAACAGGCCTCGTGATATTCATG 157 135 843 Antisense
TTCATGACAATCTCTTTTTTCCTTC 598 687 862 Antisense
TTCCTTCTGGAGCTCCCAATAGGCA 89 699 880 Antisense
GGCATCGGCCTAGTTTTTCAAGTGG 352 537 901 Antisense
GCCACATATGTCAATCACCTAGTTA 391 279 955 Antisense
ATGTTCTCCATGTCAAGCCAATACC 164 47 1021 Antisense
Sequence Source Affymetrix Proprietary Database