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[184520_at]

Description M01E11.3 /REP_DB=WormBase Gene ID /WP=CE12292 /TR=P91399 /GB=AAB37829.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 13.1
(-3)
A 		18.2
(-2.4)
A 		67.2
(3)
A 		56.6
(1.8)
A 		54
B 50.2
(3)
A 		32.7
(-1.3)
A 		26
(-3)
A 		29.2
(-2.2)
A 		24
C 4.8
(-3)
A 		18.2
(-1.7)
A 		14.2
(-2.1)
A 		67.3
(3)
A 		63
avr 22.7
(-3) 		23
(-2.9) 		35.8
(-0.2) 		51
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 7.4
(-3)
A 		56.5
(-1.5)
A 		36.5
(-2.1)
A 		78.4
(-0.8)
A 		157.6
(1.7)
P 		201.2
(3)
P 		194
B 33.1
(-2.9)
A 		31.5
(-3)
A 		35.8
(-2.8)
A 		38.7
(-2.7)
A 		108.8
(0.4)
P 		169
(3)
P 		138
C 8.8
(-3)
A 		9.9
(-3)
A 		25.8
(-2.3)
A 		72.9
(-0.4)
A 		68.3
(-0.6)
A 		157.9
(3)
P 		149
avr 16.4
(-3) 		32.6
(-2.4) 		32.7
(-2.4) 		63.3
(-1.2) 		111.6
(0.6) 		176
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-2.6)
A 		4
(-3)
A 		17.6
(3)
A 		8.3
(-1.1)
A 		14
B 16
(3)
A 		8.1
(-1.7)
A 		6
(-3)
A 		6.2
(-2.9)
A 		10
C 1.6
(-3)
A 		5.2
(-0.8)
A 		5
(-0.9)
A 		11.4
(3)
A 		10
avr 7.5
(-0.2) 		5.8
(-3) 		9.5
(3) 		8.6
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 1.4
(-3)
A 		20.1
(-0.6)
A 		7.9
(-2.2)
A 		19.9
(-0.7)
A 		47.5
(2.8)
P 		49
(3)
P 		48
B 11.5
(-2.7)
A 		10.5
(-2.8)
A 		8.7
(-3)
A 		10.3
(-2.8)
A 		44.2
(0.9)
P 		63
(3)
P 		54
C 3.3
(-3)
A 		3
(-3)
A 		6.6
(-2.6)
A 		14.7
(-1.6)
A 		22.1
(-0.7)
A 		52.9
(3)
P 		50
avr 5.4
(-3) 		11.2
(-2.3) 		7.7
(-2.7) 		15
(-1.8) 		37.9
(0.9) 		55
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1595
Sequence Type Exemplar sequence
Representative Public ID M01E11.3 NCBI
Target Description M01E11.3 /REP_DB=WormBase Gene ID /WP=CE12292 /TR=P91399 /GB=AAB37829.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059231 NCBI Caenorhabditis elegans M01E11.3 (M01E11.3) mRNA, complete cds. 11/11 None
SNAP00000002373 ENSEMBL cdna:SNAP chromosome:CEL140:I:5573246:5576640:1 11/11 None
GENEFINDER00000002387 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5573246:5576640:1 11/11 None
M01E11.3 ENSEMBL cdna:known chromosome:CEL140:I:5573246:5576729:1 gene:M01E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5573245-5576640(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E11.3
Entrez Gene 172212 Entrez gene
SwissProt P91399 EMBL-EBI
WormBase CE12292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37829 Hypothetical protein M01E11.3 [Caenorhabditis elegans] ref|NP_491632.1| M01E11.3 [Caenorhabditis elegans] 0.0
blast CAE58965 Hypothetical protein CBG02237 [Caenorhabditis briggsae] 1.0E-170
blast CAE58965 Hypothetical protein CBG02237 [Caenorhabditis briggsae] 1.0E-167
blast CAE58965 Hypothetical protein CBG02237 [Caenorhabditis briggsae] 1.0E-162
blast CAE68914 Hypothetical protein CBG14893 [Caenorhabditis briggsae] 6.0E-55
Sequence
Target Sequence 
>C. ELEGANS:184520_AT
gtggattctgttgtaccggaggaccagaaaatggttggagctcagggaaagaagagacca
aatgtaagacaagaaaatgataatatgaaaaacaaacaatcggcgaatgttcaagtttat
aggacaccttttgctgaaaggttgaacagtggcgattcatcttcaaaattgtcgccccaa
ttattccaacgaatggctgatctgcaaatcgtaccattcggcgatgcactatttaatcga
aaattctggatgatgtcaaaaattgtagtcattatgccaagtatctgcagtcaaatacac
gagttacaatctgatggcatcgattggctactacagatacgagtaacagatacatcagta
aaaaatgttatctgccgcgtttccacgagccttctaaatcgaatttttggatttgatgtt
caacagtgcaagaatttattcaacaaaaatcaagtcgaggagctacgtgcgaagaaatgc
gaagccgaacgtaaacttcttggattcaaacgtcttgatcttcttttatgggttgaggtt
tcaccagagcgtaaccaaattccgctcattcttgacgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATTCTGTTGTACCGGAGGACC 566 483 2182 Antisense
GGTTGAACAGTGGCGATTCATCTTC 574 507 2321 Antisense
TTCATCTTCAAAATTGTCGCCCCAA 9 689 2337 Antisense
GGCTGATCTGCAAATCGTACCATTC 69 541 2376 Antisense
TCGTACCATTCGGCGATGCACTATT 219 605 2390 Antisense
GATGGCATCGATTGGCTACTACAGA 17 407 2494 Antisense
TAAAAAATGTTATCTGCCGCGTTTC 206 641 2540 Antisense
GCCGAACGTAAACTTCTTGGATTCA 271 285 2665 Antisense
AACGTCTTGATCTTCTTTTATGGGT 168 145 2690 Antisense
GGTTGAGGTTTCACCAGAGCGTAAC 608 501 2712 Antisense
AAATTCCGCTCATTCTTGACGTGAA 629 115 2738 Antisense
Sequence Source Affymetrix Proprietary Database