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[184519_s_at]

Description K08F11.3 /REP_DB=WormBase Gene ID /WP=CE11954 /TR=Q94261 /GB=AAB09161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 67      6grp_total > 37      4grp_total > 40      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1121
1 2 3 4 range
A 2941.7
(-3)
P 		3273.7
(0.1)
P 		3579.8
(3)
P 		3312.6
(0.5)
P 		638
B 2819.8
(-3)
P 		3437.1
(0.3)
P 		3940.4
(3)
P 		3467.5
(0.5)
P 		1121
C 2932.8
(-3)
P 		3316.5
(3)
P 		3310.2
(2.9)
P 		3079.3
(-0.7)
P 		384
avr 2898.1
(-3) 		3342.4
(0.7) 		3610.1
(3) 		3286.5
(0.3) 		712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 2145.4
(3)
P 		1687.6
(-2.7)
P 		1820.4
(-1)
P 		1699
(-2.5)
P 		1661.5
(-3)
P 		2138.7
(2.9)
P 		484
B 2076.2
(3)
P 		1772.9
(-0)
P 		1751.8
(-0.2)
P 		1801.8
(0.3)
P 		1476.5
(-3)
P 		1817.9
(0.4)
P 		600
C 2044.7
(3)
P 		1673.2
(-2.5)
P 		1698.8
(-2.1)
P 		1638.6
(-3)
P 		1695.5
(-2.2)
P 		1811.1
(-0.5)
P 		406
avr 2088.8
(3) 		1711.2
(-1.7) 		1757
(-1.2) 		1713.1
(-1.7) 		1611.2
(-3) 		1922.6
(0.9) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 1071.1
(3)
P 		710.6
(-0.7)
P 		935.8
(1.6)
P 		484.9
(-3)
P 		586
B 899.2
(2.5)
P 		848.9
(0.8)
P 		913.1
(3)
P 		738.9
(-3)
P 		174
C 970.8
(1.3)
P 		953.5
(1.1)
P 		1153.7
(3)
P 		519.2
(-3)
P 		635
avr 980.4
(2.7) 		837.7
(0.7) 		1000.9
(3) 		581
(-3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 395.5
(-3)
P 		600.2
(3)
P 		396.4
(-3)
P 		430.9
(-2)
P 		501.4
(0.1)
P 		520.7
(0.7)
P 		205
B 722.4
(3)
P 		590.1
(0.3)
P 		425.4
(-3)
P 		477.2
(-2)
P 		599.9
(0.5)
P 		677.9
(2.1)
P 		297
C 757.9
(3)
P 		510.5
(-0.5)
P 		432.4
(-1.6)
P 		329.5
(-3)
P 		548.6
(0.1)
P 		606.3
(0.9)
P 		428
avr 625.3
(3) 		566.9
(1.4) 		418.1
(-2.8) 		412.5
(-3) 		550
(0.9) 		601.6
(2.3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184519_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10831
Sequence Type Exemplar sequence
Representative Public ID K08F11.3 NCBI
Target Description K08F11.3 /REP_DB=WormBase Gene ID /WP=CE11954 /TR=Q94261 /GB=AAB09161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068217 NCBI Caenorhabditis elegans K08F11.3 (K08F11.3) mRNA, complete cds. 11/11 None
SNAP00000001908 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4706997:4710730:-1 11/11 None
GENEFINDER00000001913 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4706997:4710384:-1 11/11 None
K08F11.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:4706768:4710746:-1 gene:K08F11.3 11/11 None
K08F11.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:4706768:4710384:-1 gene:K08F11.3 11/11 None
K08F11.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:4706768:4710386:-1 gene:K08F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4707002-4710390(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08F11.3
Entrez Gene 177236 Entrez gene
SwissProt Q94261 EMBL-EBI
WormBase CE11954 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246564_AT proteasome family protein at
CANINE:1604156_AT similar to B5 receptor cfa
CANINE:1591605_AT similar to B5 receptor cfa
CANINE_2:CFAAFFX.11955.1.S1_S_AT similar to B5 receptor cfa
DROSOPHILA_2:1629578_AT dm
DROSGENOME1:154198_AT dm
CHICKEN:GGAAFFX.7680.1.S1_S_AT similar to dendritic cell protein gga
HG-U133_PLUS_2:202231_AT dendritic cell protein hs
HG-U133A:202231_AT dendritic cell protein hs
HG-U133A_2:202231_AT dendritic cell protein hs
HU35KSUBA:AA187814_AT dendritic cell protein hs
HU35KSUBB:RC_AA147725_AT dendritic cell protein hs
HG-U133A:202232_S_AT dendritic cell protein hs
HG-U133_PLUS_2:202232_S_AT dendritic cell protein hs
HG-FOCUS:202232_S_AT dendritic cell protein hs
HG-U133A_2:202232_S_AT dendritic cell protein hs
U133_X3P:G5453653_3P_AT dendritic cell protein hs
HG-U95AV2:35814_AT dendritic cell protein hs
HG-U95C:60552_I_AT dendritic cell protein hs
HG-U95C:60553_R_AT dendritic cell protein hs
HG-U133_PLUS_2:239848_AT Dendritic cell protein hs
HG-U133B:239848_AT Dendritic cell protein hs
U133_X3P:HS.274553.0.S1_3P_AT Dendritic cell protein hs
U133_X3P:HS.120054.0.A1_3P_AT Dendritic cell protein hs
HG-U133A_2:215190_AT Dendritic cell protein hs
HG-U133_PLUS_2:215190_AT Dendritic cell protein hs
HG-U133A:215190_AT Dendritic cell protein hs
HG-U95C:66366_AT Dendritic cell protein hs
HG-U95D:73112_AT Dendritic cell protein hs
HG-U133_PLUS_2:237084_AT Dendritic cell protein hs
HG-U133B:237084_AT Dendritic cell protein hs
HG-U95E:84048_AT Dendritic cell protein hs
U133_X3P:HS.163348.0.A1_3P_AT Dendritic cell protein hs
MOUSE430_2:1451076_S_AT dendritic cell protein GA17 mm
MOUSE430A_2:1451076_S_AT dendritic cell protein GA17 mm
MOE430A:1451076_S_AT dendritic cell protein GA17 mm
MU11KSUBA:AA145203_AT dendritic cell protein GA17 mm
MU11KSUBA:AA145203_G_AT dendritic cell protein GA17 mm
MG-U74AV2:96882_AT dendritic cell protein GA17 mm
MOE430A:1437189_X_AT dendritic cell protein GA17 mm
MOUSE430A_2:1437189_X_AT dendritic cell protein GA17 mm
MOUSE430_2:1437189_X_AT dendritic cell protein GA17 mm
RG-U34A:RC_AA686164_AT similar to Dendritic cell protein GA17 rn
RG-U34C:RC_AI100794_AT similar to Dendritic cell protein GA17 rn
RAE230A:1373044_AT similar to Dendritic cell protein GA17 rn
RAT230_2:1373044_AT similar to Dendritic cell protein GA17 rn
RAE230B:1383042_AT Similar to Dendritic cell protein GA17 rn
RAT230_2:1383042_AT Similar to Dendritic cell protein GA17 rn
RG-U34B:RC_AA944383_AT Similar to Dendritic cell protein GA17 rn
Protein Similarities
Method ID Description E-Value
blast AAB09161 Hypothetical protein K08F11.3 [Caenorhabditis elegans] ref|NP_500618.1| K08F11.3 [Caenorhabditis elegans] sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subunit 7 (Signalosome subunit 7) 0.0
blast CAE58573 Hypothetical protein CBG01738 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 5.6E-23
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 5.6E-23
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 5.6E-23
Sequence
Target Sequence 
>C. ELEGANS:184519_S_AT
gactgcacttctcggaacatacacagaaaaggacgctgccgcagcacgagatgatgctat
ggaatgtgttagaactgctgtcgtcgatccgaaatcattctcctttgatcatctcgaacg
actcagtgcagtcaaagcgttgaagacttccgatccactgatgttcacagctctcgagtt
gttcatctctggaactctcaaggattataaggaatttgttgccaagaatccgaaatttgt
caccgagcacttgaaggttgacgagactattcttctcaagaagatccgtcttttgacact
catgtcgcttgctgaagagaagaacgaaatcagtctcgacgaattggccaaacaattgga
cattcttgccgatgagaccctcgaagaatttgtgatcgacgcgattcaggtgaacgcgat
ttccggaaaaatcaatgaaatggcccgaactctcatcgtcagctcctaccagcacagaag
attcggaacggaacaatgggttctactcgagaaacgcctgaaagtcctcatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCACTTCTCGGAACATACACA 493 375 591 Antisense
GTGTTAGAACTGCTGTCGTCGATCC 219 485 656 Antisense
TCGTCGATCCGAAATCATTCTCCTT 460 605 671 Antisense
CATTCTCCTTTGATCATCTCGAACG 347 217 686 Antisense
TGAAGACTTCCGATCCACTGATGTT 54 575 731 Antisense
GATGTTCACAGCTCTCGAGTTGTTC 574 409 750 Antisense
GAATCCGAAATTTGTCACCGAGCAC 105 331 816 Antisense
GAAGATCCGTCTTTTGACACTCATG 148 339 870 Antisense
GACACTCATGTCGCTTGCTGAAGAG 449 367 885 Antisense
TTCTTGCCGATGAGACCCTCGAAGA 669 687 953 Antisense
GAGAAACGCCTGAAAGTCCTCATCG 380 393 1099 Antisense
Sequence Source Affymetrix Proprietary Database