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[184518_s_at]

Description T28A11.3 /REP_DB=WormBase Gene ID /WP=CE14285 /TR=P91521 /GB=AAC48115.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 1.9
(-3)
A 		21.6
(2.2)
A 		24.8
(3)
A 		5
(-2.2)
A 		23
B 1.9
(-3)
A 		10.2
(-1.5)
A 		35.6
(3)
A 		13.1
(-1)
A 		34
C 3.1
(-2.9)
A 		1.5
(-3)
A 		10.1
(-2.5)
A 		95.6
(3)
A 		94
avr 2.3
(-3) 		11.1
(-1.5) 		23.5
(0.6) 		37.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 5.9
(-3)
A 		6.1
(-3)
A 		24.6
(-0.1)
A 		31.8
(1)
A 		31
(0.9)
A 		44.5
(3)
A 		39
B 25
(3)
A 		22.6
(2.4)
A 		0.9
(-3)
A 		16.4
(0.9)
A 		20.3
(1.8)
A 		15.2
(0.6)
A 		24
C 10.9
(-1.8)
A 		38.2
(2)
A 		2.1
(-3)
A 		45.8
(3)
A 		2
(-3)
A 		42.2
(2.5)
A 		44
avr 13.9
(-1.9) 		22.3
(0.2) 		9.2
(-3) 		31.3
(2.3) 		17.8
(-0.9) 		34
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.7
(-3)
A 		4.7
(1.1)
A 		6.5
(3)
A 		0.7
(-3)
A 		6
B 0.6
(-3)
A 		2.5
(-1.5)
A 		8.2
(3)
A 		2.8
(-1.3)
A 		8
C 1
(-2.8)
A 		0.4
(-3)
A 		3.5
(-1.8)
A 		16.1
(3)
A 		16
avr 0.8
(-3) 		2.5
(-1.2) 		6.1
(2.6) 		6.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.2
(-2.3)
A 		5.4
(-0.3)
A 		8.1
(1.3)
A 		9.4
(2.1)
A 		10.8
(3)
A 		10
B 8.7
(3)
A 		7.5
(2.2)
A 		0.2
(-3)
A 		4.4
(-0)
A 		8.3
(2.7)
A 		5.7
(0.9)
A 		9
C 4
(-1.5)
A 		11.7
(1.9)
A 		0.5
(-3)
A 		9.2
(0.8)
A 		0.6
(-3)
A 		14.1
(3)
A 		14
avr 4.6
(-1.1) 		7.1
(0.7) 		2
(-3) 		7.2
(0.8) 		6.1
(0) 		10.2
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184518_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15509
Sequence Type Exemplar sequence
Representative Public ID T28A11.3 NCBI
Target Description T28A11.3 /REP_DB=WormBase Gene ID /WP=CE14285 /TR=P91521 /GB=AAC48115.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071503(11), NM_071527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071503 NCBI Caenorhabditis elegans T28A11.3 (T28A11.3) mRNA, complete cds. 11/11 None
NM_071527 NCBI Caenorhabditis elegans C17B7.3 (C17B7.3) mRNA, complete cds. 11/11 A 
SNAP00000020310 ENSEMBL cdna:SNAP chromosome:CEL140:V:3342986:3343691:1 11/11 None
GENEFINDER00000020321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3342986:3343691:1 11/11 None
SNAP00000028216 ENSEMBL cdna:SNAP chromosome:CEL140:V:3275209:3275900:1 11/11 None
GENEFINDER00000028223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3273881:3275900:1 11/11 None
T28A11.3 ENSEMBL cdna:known chromosome:CEL140:V:3275209:3275900:1 gene:T28A11.3 11/11 None
C17B7.3 ENSEMBL cdna:known chromosome:CEL140:V:3342630:3343691:1 gene:C17B7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3275208-3275900(+) 100.0 100.0
chrV:3342985-3343691(+) 92.29 92.29
Public Domain and Genome References
Gene Title

Ensembl T28A11.3
C17B7.3
Entrez Gene 182705 Entrez gene
189010 Entrez gene
SwissProt O45158 EMBL-EBI
P91521 EMBL-EBI
WormBase CE16851 Wormbase
CE14285 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 1.0E-114
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-114
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-107
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-96
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-90
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-90
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503928.1 2 4-23,30-52
C17B7.3 2 4-23,30-52
GENEFINDER00000028223 2 4-23,99-121
Sequence
Target Sequence 
>C. ELEGANS:184518_S_AT
gcgtcaaaagacaccaattgtactgaaggatcgcttgatgcaattttatgtctcctgaat
ctgcaaaaattcgccgaaaaatctgacgagcttgatatgaatgacaaagatgagttgaag
ggcttcaaggatacttgcgattctctgcgaagctgtctggccaacctcaaatgctcacca
gtgccaaaggatcaaaaagaagcagcgctcaggagtatagaaaaatattgcgatgctgtt
gtgtacgtatacagtgattttgcacagtgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCAAAAGACACCAATTGTACTG 18 291 82 Antisense
TTGTACTGAAGGATCGCTTGATGCA 655 707 99 Antisense
GATGCAATTTTATGTCTCCTGAATC 178 413 118 Antisense
TTATGTCTCCTGAATCTGCAAAAAT 557 679 127 Antisense
GAAGGGCTTCAAGGATACTTGCGAT 566 335 198 Antisense
TACTTGCGATTCTCTGCGAAGCTGT 494 643 213 Antisense
CTCAAATGCTCACCAGTGCCAAAGG 691 227 247 Antisense
AATGCTCACCAGTGCCAAAGGATCA 104 165 251 Antisense
AAGAAGCAGCGCTCAGGAGTATAGA 160 153 278 Antisense
ATTGCGATGCTGTTGTGTACGTATA 437 7 308 Antisense
ATACAGTGATTTTGCACAGTGCAGG 188 25 330 Antisense
Sequence Source Affymetrix Proprietary Database