[Home] | [Total List]

[184517_at]

Description Y51H4A.21 /REP_DB=WormBase Gene ID /WP=CE25365 /TR=Q9U260 /GB=CAB63385.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 17.9
(-1.1)
A 		11.4
(-2.3)
A 		7.9
(-3)
A 		39.7
(3)
A 		32
B 8.4
(2.5)
A 		5.2
(0.1)
A 		9.1
(3)
A 		0.9
(-3)
A 		8
C 16.5
(2.6)
A 		1.5
(-2.7)
A 		17.7
(3)
A 		0.6
(-3)
A 		17
avr 14.3
(3) 		6
(-3) 		11.6
(1) 		13.7
(2.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 14.9
(1.6)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		17.8
(2.5)
A 		19.3
(3)
A 		1.4
(-2.7)
A 		19
B 6.4
(-2)
A 		1.8
(-2.9)
A 		17.9
(0.3)
A 		31.5
(3)
A 		1.2
(-3)
A 		1.7
(-2.9)
A 		30
C 2
(-2.5)
A 		20.1
(3)
A 		0.4
(-3)
A 		3.5
(-2.1)
A 		6.8
(-1.1)
A 		2.3
(-2.4)
A 		20
avr 7.8
(-0.7) 		7.6
(-0.8) 		6.3
(-1.3) 		17.6
(3) 		9.1
(-0.2) 		1.8
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.5
(3)
A 		2.5
(-2.5)
A 		2.1
(-3)
A 		5.8
(2)
A 		4
B 2.7
(3)
A 		1.3
(-0.4)
A 		2.1
(1.6)
A 		0.2
(-3)
A 		3
C 5.5
(2.3)
A 		0.4
(-2.7)
A 		6.2
(3)
A 		0.1
(-3)
A 		6
avr 4.9
(3) 		1.4
(-3) 		3.5
(0.6) 		2
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.7
(-0.3)
A 		0.3
(-2.8)
A 		0.1
(-3)
A 		4.5
(1.6)
A 		5.8
(3)
A 		0.3
(-2.8)
A 		6
B 2.2
(-1.7)
A 		0.6
(-2.9)
A 		4.3
(-0.1)
A 		8.4
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		8
C 0.7
(-2.4)
A 		6.1
(3)
A 		0.1
(-3)
A 		0.7
(-2.4)
A 		2.2
(-0.9)
A 		0.8
(-2.3)
A 		6
avr 1.9
(-1) 		2.3
(-0.4) 		1.5
(-1.6) 		4.5
(3) 		2.8
(0.4) 		0.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9624
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.21 NCBI
Target Description Y51H4A.21 /REP_DB=WormBase Gene ID /WP=CE25365 /TR=Q9U260 /GB=CAB63385.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070577 NCBI Caenorhabditis elegans Y51H4A.21 (Y51H4A.21) mRNA, complete cds. 11/11 None
Y51H4A.21 ENSEMBL cdna:known chromosome:CEL140:IV:16684997:16685646:-1 gene:Y51H4A.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000194 7/11 Cross Hyb Matching Probes None
GENEFINDER00000000210 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16685002-16685652(-) 89.9 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.21
Entrez Gene 190156 Entrez gene
SwissProt Q9U260 EMBL-EBI
WormBase CE25365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63385 Hypothetical protein Y51H4A.21 [Caenorhabditis elegans] ref|NP_502978.1| Y51H4A.21 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502978.1 1 110-129
Y51H4A.21 1 110-129
Sequence
Target Sequence 
>C. ELEGANS:184517_AT
gatgaatggcatcagcaacttgctgaaacgtctgaaaagcctacgaagttcctacgaatt
cttgcggacgctatcgaattttcggatttgaaggcgttccgtcctcaacaattcactgtt
atgagaaacgaaaatgttttcgttgtattctcgagcaataaaacagccaatattgctttc
atatttcacacaatagtgaagcagcaaaaattaactatttttaaatttcaccaacaaggt
tttcaattaatcttgccttctcaatataccaaatataaatgtaaaaaaattatttacttt
ttatttatttgtttttcagcagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATGGCATCAGCAACTTGCTG 186 411 52 Antisense
AGCCTACGAAGTTCCTACGAATTCT 303 83 89 Antisense
CCTACGAATTCTTGCGGACGCTATC 112 265 102 Antisense
TTGCGGACGCTATCGAATTTTCGGA 52 701 113 Antisense
GTCCTCAACAATTCACTGTTATGAG 390 477 152 Antisense
GTTTTCGTTGTATTCTCGAGCAATA 190 449 187 Antisense
AAAACAGCCAATATTGCTTTCATAT 590 129 211 Antisense
TTGCTTTCATATTTCACACAATAGT 679 703 224 Antisense
GGTTTTCAATTAATCTTGCCTTCTC 611 505 289 Antisense
ATCTTGCCTTCTCAATATACCAAAT 365 31 301 Antisense
ATTTATTTGTTTTTCAGCAGTTTCA 548 13 354 Antisense
Sequence Source Affymetrix Proprietary Database