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[184516_at]

Description C46E10.3 /REP_DB=WormBase Gene ID /WP=CE08761 /TR=O44716 /GB=AAB96688.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 10.8
(-3)
A 		117.3
(3)
A 		13.3
(-2.9)
A 		14.8
(-2.8)
A 		107
B 11.5
(-3)
A 		44.5
(1.2)
A 		58.5
(3)
A 		37.3
(0.3)
A 		47
C 44.1
(0)
A 		78.5
(3)
A 		9.3
(-3)
A 		49.9
(0.5)
A 		69
avr 22.1
(-3) 		80.1
(3) 		27
(-2.5) 		34
(-1.8) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 15.8
(0.8)
A 		8.7
(-2.3)
A 		7.1
(-3)
A 		11.1
(-1.2)
A 		20.7
(3)
A 		11.4
(-1.1)
A 		14
B 30
(-0.7)
A 		20.3
(-1.8)
A 		62.3
(3)
A 		13.3
(-2.6)
A 		12.1
(-2.8)
A 		10
(-3)
A 		52
C 7.1
(-3)
A 		43.9
(1.6)
A 		54.9
(3)
A 		47.8
(2.1)
A 		11.2
(-2.5)
A 		47.4
(2.1)
A 		48
avr 17.6
(-2.3) 		24.3
(-0.8) 		41.4
(3) 		24.1
(-0.9) 		14.7
(-3) 		22.9
(-1.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.9
(-2.6)
A 		25.5
(3)
A 		3.5
(-2.7)
A 		2.2
(-3)
A 		23
B 3.7
(-3)
A 		11
(1.4)
A 		13.6
(3)
A 		7.9
(-0.5)
A 		10
C 14.6
(0.5)
A 		22.6
(3)
A 		3.2
(-3)
A 		8.4
(-1.4)
A 		19
avr 7.4
(-2.5) 		19.7
(3) 		6.8
(-2.7) 		6.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.9
(-1.3)
A 		3.1
(-1)
A 		1.5
(-3)
A 		2.8
(-1.4)
A 		6.3
(3)
A 		2.8
(-1.4)
A 		5
B 10.4
(0.6)
A 		6.8
(-1.3)
A 		15.1
(3)
A 		3.5
(-3)
A 		4.9
(-2.3)
A 		3.7
(-2.9)
A 		12
C 2.6
(-3)
A 		13.4
(1.9)
A 		14
(2.1)
A 		9.6
(0.2)
A 		3.6
(-2.5)
A 		15.9
(3)
A 		13
avr 5.3
(-2.5) 		7.8
(0.3) 		10.2
(3) 		5.3
(-2.5) 		4.9
(-3) 		7.5
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5066
Sequence Type Exemplar sequence
Representative Public ID C46E10.3 NCBI
Target Description C46E10.3 /REP_DB=WormBase Gene ID /WP=CE08761 /TR=O44716 /GB=AAB96688.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062228 NCBI Caenorhabditis elegans C46E10.3 (C46E10.3) mRNA, complete cds. 11/11 None
SNAP00000007035 ENSEMBL cdna:SNAP chromosome:CEL140:II:3721310:3723078:1 11/11 None
GENEFINDER00000007041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3721310:3723078:1 11/11 None
C46E10.3 ENSEMBL cdna:known chromosome:CEL140:II:3721310:3723078:1 gene:C46E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3721308-3723077(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E10.3
Entrez Gene 183507 Entrez gene
SwissProt O44716 EMBL-EBI
WormBase CE08761 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96688 Hypothetical protein C46E10.3 [Caenorhabditis elegans] ref|NP_494629.1| C46E10.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184516_AT
agaatcagcgtcttcgtgagctctttccaagcgccgttgagatggtgaatggcagaccag
aaccgtttccccaatgctccgtcatcaacttcgtcccctccctggccatctcgtcactac
cttcaacaagcatcccagcaaccatcctgccgaaaattgacaacctagcaaaagttccga
gttttgcgccatttcaaatttcgtcgctgcccctctccgaacctttcctacgctcaccga
gcctgcaggacgatttgaagctggctggaatcaagaatatgcaggacaagcaaaatctgt
acgtctatgagaaactcgtcaaaaaatgtctgttccatccatcaaaaggtgattgccctc
aggattcctatgatcttccgcgtttttcgacagttctgaaagctttgtatggatgcacag
ttggcaactcagatatggaagaagcaactgaccgtctgacacggcaaatcgccgacgagc
agcgatttcaggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCAGCGTCTTCGTGAGCTCTT 494 75 629 Antisense
CTCTTTCCAAGCGCCGTTGAGATGG 326 229 649 Antisense
GAATGGCAGACCAGAACCGTTTCCC 704 329 675 Antisense
AGCAACCATCCTGCCGAAAATTGAC 296 75 765 Antisense
TCACCGAGCCTGCAGGACGATTTGA 378 625 862 Antisense
AAAAATGTCTGTTCCATCCATCAAA 574 129 950 Antisense
AAAGGTGATTGCCCTCAGGATTCCT 541 121 973 Antisense
CTCAGGATTCCTATGATCTTCCGCG 641 227 986 Antisense
TTCCGCGTTTTTCGACAGTTCTGAA 244 697 1004 Antisense
GAAGCAACTGACCGTCTGACACGGC 208 341 1069 Antisense
CGCCGACGAGCAGCGATTTCAGGTC 223 255 1098 Antisense
Sequence Source Affymetrix Proprietary Database