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[184515_s_at]

Description F43C11.9 /REP_DB=WormBase Gene ID /WP=CE23724 /TR=Q9U5C0 /GB=AAF16619.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      6grp_highest_nonorm > 81      6grp_total > 56      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 218.5
(2)
P 		75.3
(-3)
A 		221.1
(2.1)
A 		245.9
(3)
P 		171
B 256.8
(1.6)
P 		180.9
(-0.5)
A 		90.2
(-3)
A 		309.8
(3)
P 		220
C 253.3
(2.3)
P 		162
(-0.4)
A 		73.3
(-3)
A 		277.1
(3)
P 		204
avr 242.9
(1.6) 		139.4
(-2.6) 		128.2
(-3) 		277.6
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 293.8
(1.2)
P 		309.5
(1.9)
P 		251.3
(-0.6)
P 		256.7
(-0.3)
P 		193.6
(-3)
P 		335.5
(3)
P 		142
B 230.3
(-1.1)
P 		265.2
(0.2)
P 		265.9
(0.2)
P 		252.8
(-0.3)
P 		179.1
(-3)
P 		341.9
(3)
P 		163
C 227.6
(-1.8)
P 		315.4
(1.7)
P 		324.2
(2)
P 		278.3
(0.2)
P 		196.4
(-3)
P 		348.6
(3)
P 		152
avr 250.6
(-0.6) 		296.7
(1.2) 		280.5
(0.6) 		262.6
(-0.1) 		189.7
(-3) 		342
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 79.6
(3)
P 		16.3
(-3)
A 		57.8
(0.9)
A 		36
(-1.1)
P 		63
B 81.9
(3)
P 		44.7
(-0.7)
A 		20.9
(-3)
A 		66
(1.4)
P 		61
C 83.9
(3)
P 		46.6
(-0.8)
A 		25.5
(-3)
A 		46.7
(-0.8)
P 		58
avr 81.8
(3) 		35.9
(-2.8) 		34.7
(-3) 		49.6
(-1.1) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 54.2
(-3)
P 		110.1
(3)
P 		54.7
(-2.9)
P 		65.1
(-1.8)
P 		58.4
(-2.5)
P 		81.7
(-0)
P 		56
B 80.1
(-1.5)
P 		88.3
(-0.7)
P 		64.6
(-3)
P 		67
(-2.8)
P 		72.8
(-2.2)
P 		127.5
(3)
P 		63
C 84.4
(-0.2)
P 		96.2
(1)
P 		82.5
(-0.4)
P 		56
(-3)
P 		63.5
(-2.3)
P 		116.7
(3)
P 		61
avr 72.9
(-1.7) 		98.2
(1.6) 		67.3
(-2.4) 		62.7
(-3) 		64.9
(-2.7) 		108.6
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184515_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4585
Sequence Type Exemplar sequence
Representative Public ID F43C11.9 NCBI
Target Description F43C11.9 /REP_DB=WormBase Gene ID /WP=CE23724 /TR=Q9U5C0 /GB=AAF16619.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061845 NCBI Caenorhabditis elegans F43C11.9 (F43C11.9) mRNA, complete cds. 11/11 None
SNAP00000012994 ENSEMBL cdna:SNAP chromosome:CEL140:II:2335977:2344518:-1 11/11 None
GENEFINDER00000013021 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2337963:2340738:-1 11/11 None
F43C11.9 ENSEMBL cdna:known chromosome:CEL140:II:2337913:2340747:-1 gene:F43C11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2337961-2340737(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.9
Entrez Gene 173592 Entrez gene
SwissProt Q9U5C0 EMBL-EBI
WormBase CE23724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16619 Hypothetical protein F43C11.9 [Caenorhabditis elegans] ref|NP_494246.1| F43C11.9 [Caenorhabditis elegans] 0.0
blast AAF16619 Hypothetical protein F43C11.9 [Caenorhabditis elegans] ref|NP_494246.1| F43C11.9 [Caenorhabditis elegans] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:184515_S_AT
tcggctcaacacaatggctcagcaatcggagcaagtcatcgatattgattttttaacgac
aaatatggatgcacggatctaccaggaagctctgaacatggagatgactatgagaggatc
ccaagtcccaaagtggctgacggagctggtgaacggatcatcagagctgccggaggatcc
tgacgtgatctttgtgagaacttgcaagcccgacctagaaccactcacggctaaacctgc
aaagctcccgtcaccccggcaaccggaatccaagccatccaacgaagcttcaagctccca
actcgagcccacatcagcatcacagcccccatctcgagtcgatcagatcttgaagtcaag
atcaggattaccaacaaaggatgcagacagctcctccgaagtagctccacgaaaacggaa
gccgaaatctccggcatttgacatttacaatatgaagcgccaacccgatgggacttttct
cataccgagccacgtcatgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTCAACACAATGGCTCAGCAA 382 607 432 Antisense
GATGCACGGATCTACCAGGAAGCTC 389 413 499 Antisense
GGATCCCAAGTCCCAAAGTGGCTGA 117 501 547 Antisense
GCCGGAGGATCCTGACGTGATCTTT 172 283 600 Antisense
ACCACTCACGGCTAAACCTGCAAAG 377 85 651 Antisense
GCCATCCAACGAAGCTTCAAGCTCC 138 281 705 Antisense
CCCCCATCTCGAGTCGATCAGATCT 582 261 757 Antisense
CAAAGGATGCAGACAGCTCCTCCGA 268 193 806 Antisense
AGCCGAAATCTCCGGCATTTGACAT 557 81 851 Antisense
TGAAGCGCCAACCCGATGGGACTTT 473 571 884 Antisense
TCTCATACCGAGCCACGTCATGGGC 486 611 909 Antisense
Sequence Source Affymetrix Proprietary Database