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[184513_at]

Description Y49F6C.7 /REP_DB=WormBase Gene ID /WP=CE22271 /TR=Q9TYJ4 /GB=AAD12867.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 42.3
(1.8)
A 		51.7
(3)
A 		4.8
(-3)
A 		13.3
(-1.9)
A 		47
B 9.7
(-3)
A 		43.7
(3)
A 		18.1
(-1.5)
A 		25.3
(-0.2)
A 		34
C 22
(-3)
A 		53
(-0.3)
A 		30.1
(-2.3)
A 		91.7
(3)
A 		70
avr 24.7
(-1.7) 		49.5
(3) 		17.7
(-3) 		43.4
(1.8) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 83.5
(3)
A 		49.5
(0.2)
A 		37
(-0.9)
A 		11.6
(-3)
A 		55.9
(0.7)
A 		28.2
(-1.6)
A 		72
B 33.8
(1.5)
A 		13.1
(-2.5)
A 		12.2
(-2.7)
A 		10.4
(-3)
A 		41.8
(3)
A 		24.8
(-0.2)
A 		31
C 6
(-3)
A 		53
(3)
A 		26.1
(-0.4)
A 		42.7
(1.7)
A 		32
(0.3)
A 		23.5
(-0.8)
A 		47
avr 41.1
(2.4) 		38.5
(1.7) 		25.1
(-2) 		21.6
(-3) 		43.2
(3) 		25.5
(-1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.4
(3)
A 		11.2
(1.2)
A 		1.3
(-3)
A 		1.9
(-2.7)
A 		14
B 3.1
(-3)
A 		10.8
(3)
A 		4.2
(-2.1)
A 		5.4
(-1.2)
A 		8
C 7.3
(-3)
A 		15.2
(2.8)
A 		10.5
(-0.7)
A 		15.5
(3)
A 		8
avr 8.6
(-0.2) 		12.4
(3) 		5.3
(-3) 		7.6
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 15.4
(2.1)
A 		17.6
(3)
A 		8.1
(-0.9)
A 		2.9
(-3)
A 		16.9
(2.7)
A 		6.9
(-1.4)
A 		15
B 11.7
(0.8)
A 		4.4
(-2.3)
A 		3
(-2.9)
A 		2.8
(-3)
A 		17
(3)
A 		9.2
(-0.3)
A 		14
C 2.2
(-3)
A 		16.2
(3)
A 		6.6
(-1.1)
A 		8.6
(-0.3)
A 		10.4
(0.5)
A 		7.9
(-0.6)
A 		14
avr 9.8
(0) 		12.7
(1.7) 		5.9
(-2.3) 		4.8
(-3) 		14.8
(3) 		8
(-1.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4663
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.7 NCBI
Target Description Y49F6C.7 /REP_DB=WormBase Gene ID /WP=CE22271 /TR=Q9TYJ4 /GB=AAD12867.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062119 NCBI Caenorhabditis elegans Y49F6C.7 (Y49F6C.7) mRNA, complete cds. 11/11 None
Y49F6C.7 ENSEMBL cdna:known chromosome:CEL140:II:3367253:3368192:-1 gene:Y49F6C.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037272 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037283 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3367251-3368191(-) 87.88 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6C.7
Entrez Gene 190088 Entrez gene
SwissProt Q9TYJ4 EMBL-EBI
WormBase CE39052 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494520 Y49F6C.7 [Caenorhabditis elegans] 1.0E-78
blast AAD12867 Hypothetical protein Y49F6C.7 [Caenorhabditis elegans] 5.0E-34
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 1.89999997615814
Sequence
Target Sequence 
>C. ELEGANS:184513_AT
tcaaccgccaagagatccgagcgcgggaacgagagcaggcaagattgttgcgagacttgc
gggagatggataatcggatccgaatcgagatgatgaacctgcgtgcaagagtgctggaag
aaaaccaattctctgggacttctttttctctgtttctccaccagttcagcttaagcataa
gcctaaatcctaagtctaggccttatcctaagattgagcctaagcccaagcccaagccta
aacctaagcatcagcctaagcctaagactaagcctgctcttaactttgacgggctcgccc
attatacgtgcctgaaaaaaggtatttctctagctctcttagctctctctctcctattct
cccattataggccgcctggtagagttcaccgggcacagaccacacacgccataatttttt
tctctgttaacgatggtgatagactgcgggtgatacatgagggagcagagaccttatttc
ctgttcatttccgctcggctagttttcatttcgaaaatctttttttcttccagttgcttt
atgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCGCCAAGAGATCCGAGCGCG 378 629 128 Antisense
GAAAACCAATTCTCTGGGACTTCTT 193 353 247 Antisense
TAAACCTAAGCATCAGCCTAAGCCT 679 635 366 Antisense
CTGCTCTTAACTTTGACGGGCTCGC 543 237 401 Antisense
AAAGGTATTTCTCTAGCTCTCTTAG 339 119 445 Antisense
TCTCCCATTATAGGCCGCCTGGTAG 449 607 485 Antisense
CGCCTGGTAGAGTTCACCGGGCACA 434 255 500 Antisense
AGACCACACACGCCATAATTTTTTT 432 69 524 Antisense
AGAGACCTTATTTCCTGTTCATTTC 422 69 594 Antisense
TCATTTCCGCTCGGCTAGTTTTCAT 469 619 612 Antisense
TTTTTCTTCCAGTTGCTTTATGCTT 62 675 649 Antisense
Sequence Source Affymetrix Proprietary Database