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[184512_at]

Description Y49E10.21 /REP_DB=WormBase Gene ID /WP=CE22236 /TR=Q9XTU2 /GB=CAB11555.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 27.6
(-0.3)
A 		14.5
(-2.5)
A 		48.1
(3)
A 		11.3
(-3)
A 		37
B 26.5
(3)
A 		5.9
(-2.9)
A 		5.6
(-3)
A 		26.1
(2.9)
A 		21
C 43.9
(2.1)
A 		7.3
(-2.9)
A 		6.2
(-3)
A 		50.9
(3)
A 		45
avr 32.7
(3) 		9.2
(-3) 		20
(-0.2) 		29.4
(2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 45.1
(3)
A 		8
(-2.3)
A 		32.8
(1.2)
A 		3.4
(-3)
A 		6.4
(-2.6)
A 		7.1
(-2.5)
A 		42
B 7.8
(-2.5)
A 		4.3
(-3)
A 		32
(1.1)
A 		43.8
(2.8)
A 		4.8
(-2.9)
A 		45.1
(3)
A 		41
C 52.5
(3)
A 		44.3
(2)
A 		10.1
(-2)
A 		5.9
(-2.5)
A 		19.7
(-0.9)
A 		1.8
(-3)
A 		51
avr 35.1
(3) 		18.9
(-0.9) 		25
(0.6) 		17.7
(-1.2) 		10.3
(-3) 		18
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.1
(1.6)
A 		3.1
(-2.2)
A 		12.6
(3)
A 		1.7
(-3)
A 		11
B 8.5
(3)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		5.6
(0.6)
A 		7
C 14.5
(3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		8.6
(0.1)
A 		12
avr 11
(3) 		2.2
(-3) 		5.3
(-0.9) 		5.3
(-0.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.3
(3)
A 		2.9
(-1.4)
A 		7.1
(2)
A 		0.9
(-3)
A 		1.9
(-2.2)
A 		1.7
(-2.4)
A 		7
B 2.7
(-2.5)
A 		1.4
(-3)
A 		7.8
(-0.5)
A 		11.6
(1)
A 		1.9
(-2.8)
A 		16.8
(3)
A 		15
C 19.4
(3)
A 		13.5
(1.1)
A 		2.6
(-2.4)
A 		1.2
(-2.8)
A 		6.4
(-1.1)
A 		0.6
(-3)
A 		19
avr 10.1
(3) 		5.9
(-0.8) 		5.8
(-0.9) 		4.6
(-1.9) 		3.4
(-3) 		6.4
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6116
Sequence Type Exemplar sequence
Representative Public ID Y49E10.21 NCBI
Target Description Y49E10.21 /REP_DB=WormBase Gene ID /WP=CE22236 /TR=Q9XTU2 /GB=CAB11555.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067225
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016116 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12457474:12465789:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067225 8/11 Cross Hyb Matching Probes None
SNAP00000016090 6/11 Cross Hyb Matching Probes None
Y49E10.21 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12457469-12459177(+) 98.23 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11555 Hypothetical protein Y49E10.21 [Caenorhabditis elegans] ref|NP_499626.1| Y49E10.21 [Caenorhabditis elegans] 1.0E-180
blast CAE66424 Hypothetical protein CBG11693 [Caenorhabditis briggsae] 4.0E-77
Sequence
Target Sequence 
>C. ELEGANS:184512_AT
aatttccgcagcatttggacaactttccaactattgtatcgatattattgagaacgagcg
aggagaagccgattttgagtggattttgaaaagttcacatgattgggcgaaaaatttgag
tcaaatcctgcaaaaaacagtggaaaagtcgaatttggagtcggaattgaagcaggaatt
cgaggaaaagttcaacgagaaattcgtggattttattaaattaatcacgagaaaattctt
ggaaaagtttgaattcccgccaaaccaagaatcgcgaccaatcagcgattcgctccgccc
actttccgaccaatcggcggattttttcaacataaaagagcctacaatattctcaaatgt
ggctcagatgctcaaaaagttcaaaatttcgtcggaattcaacttatcgggagatcgaga
tctacaggaaccattttatgagccgaaattcatgagcagatggattttggtatattacat
agtcgcgaaaatttcagagtacccggtcttgacacaactgtttgcgcctctaaagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCGCAGCATTTGGACAACTT 632 173 687 Antisense
GGACAACTTTCCAACTATTGTATCG 36 527 703 Antisense
GAAGCCGATTTTGAGTGGATTTTGA 146 345 751 Antisense
GCCAAACCAAGAATCGCGACCAATC 474 275 945 Antisense
CCACTTTCCGACCAATCGGCGGATT 226 273 985 Antisense
CAATCGGCGGATTTTTTCAACATAA 589 181 997 Antisense
CTCAAATGTGGCTCAGATGCTCAAA 68 229 1038 Antisense
TTCGTCGGAATTCAACTTATCGGGA 532 473 1074 Antisense
GATCGAGATCTACAGGAACCATTTT 400 415 1099 Antisense
TCAGAGTACCCGGTCTTGACACAAC 20 623 1180 Antisense
ACAACTGTTTGCGCCTCTAAAGATT 484 113 1200 Antisense
Sequence Source Affymetrix Proprietary Database