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[184508_s_at]

Description W09G12.7 /REP_DB=WormBase Gene ID /WP=CE18346 /TR=O45198 /GB=AAC04447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 79.7
(-0.6)
A 		45.8
(-2.2)
A 		28.3
(-3)
A 		156.5
(3)
A 		128
B 98.6
(3)
A 		79.1
(0.6)
A 		49.5
(-3)
A 		68.9
(-0.6)
A 		49
C 101.1
(-1)
A 		65.2
(-3)
A 		87.7
(-1.7)
A 		170.9
(3)
A 		106
avr 93.1
(-0) 		63.4
(-2.4) 		55.2
(-3) 		132.1
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 102.4
(-0.9)
A 		55.5
(-2.5)
A 		41.7
(-3)
A 		58.3
(-2.4)
A 		79.1
(-1.7)
A 		219
(3)
P 		177
B 93.2
(0.6)
A 		79.9
(-0.3)
A 		76.9
(-0.5)
A 		42.1
(-3)
A 		61.9
(-1.6)
A 		126.3
(3)
P 		84
C 74.4
(-1.6)
A 		111.8
(0.8)
A 		107.7
(0.6)
A 		75.7
(-1.6)
A 		54
(-3)
A 		144.5
(3)
P 		91
avr 90
(-1.2) 		82.4
(-1.6) 		75.4
(-2) 		58.7
(-3) 		65
(-2.6) 		163.3
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 29
(3)
A 		9.9
(-2.3)
A 		7.4
(-3)
A 		22.9
(1.3)
A 		22
B 31.4
(3)
A 		19.5
(-0.6)
A 		11.5
(-3)
A 		14.7
(-2)
A 		20
C 33.5
(3)
A 		18.8
(-3)
A 		30.6
(1.8)
A 		28.8
(1.1)
A 		15
avr 31.3
(3) 		16.1
(-3) 		16.5
(-2.8) 		22.1
(-0.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 18.9
(-1.7)
A 		19.7
(-1.6)
A 		9.1
(-3)
A 		14.8
(-2.2)
A 		23.9
(-1)
A 		53.3
(3)
P 		44
B 32.4
(0.5)
A 		26.6
(-0.4)
A 		18.7
(-1.7)
A 		11.1
(-3)
A 		25.2
(-0.7)
A 		47.1
(3)
P 		36
C 27.6
(-0.8)
A 		34.1
(0.4)
A 		27.4
(-0.8)
A 		15.2
(-3)
A 		17.5
(-2.6)
A 		48.4
(3)
P 		33
avr 26.3
(-0.9) 		26.8
(-0.8) 		18.4
(-2.2) 		13.7
(-3) 		22.2
(-1.6) 		49.6
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11102
Sequence Type Exemplar sequence
Representative Public ID W09G12.7 NCBI
Target Description W09G12.7 /REP_DB=WormBase Gene ID /WP=CE18346 /TR=O45198 /GB=AAC04447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067656 NCBI Caenorhabditis elegans W09G12.7 (W09G12.7) mRNA, complete cds. 11/11 None
SNAP00000042743 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1229111:1232782:1 11/11 None
GENEFINDER00000042747 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1229111:1230757:1 11/11 None
W09G12.7 ENSEMBL cdna:known chromosome:CEL140:IV:1229651:1230757:1 gene:W09G12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025833 1/11 Cross Hyb Matching Probes None
SNAP00000000659 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000669 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1229656-1230763(+) 91.06 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G12.7
Entrez Gene 176941 Entrez gene
SwissProt O45198 EMBL-EBI
WormBase CE18346 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95AV2:365_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HC-G110:365_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133_PLUS_2:216779_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A_2:216779_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A:216779_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133_PLUS_2:216778_S_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A_2:216778_S_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A:216778_S_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HUGENEFL:Z22780_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
U133_X3P:HS.307358.0.S1_3P_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133_PLUS_2:216809_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A_2:216809_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
HG-U133A:216809_AT cylicin, basic protein of sperm head cytoskeleton 1 hs
Protein Similarities
Method ID Description E-Value
blast NP_500057 W09G12.7 [Caenorhabditis elegans] gb|AAC04447.1| Hypothetical protein W09G12.7 [Caenorhabditis elegans] 2.0E-49
blast NP_500057 W09G12.7 [Caenorhabditis elegans] gb|AAC04447.1| Hypothetical protein W09G12.7 [Caenorhabditis elegans] 5.0E-36
Sequence
Target Sequence 
>C. ELEGANS:184508_S_AT
tcttctgattcctcggattcatccgacgactcctccgacgacgaaaaaccgaaaaagaag
aagaaaaagtcgaaaaagccaaagaaggccccgaaatccgacgaagaggttaccattaag
atcattaagaagcccaagaagaagcccgaggatctggagcgtcgtcgtcatcgcgtcaag
aagaccgaggagcacgaggaggagaaggacaaggaggagcatcacgagtcgaacgacgag
aacatggagtttgatacaagggctcggggagctccaagttcaccaaaattgacaagaaga
gccaaaagatcggagagctccgatgatgaggtggagctgcagaagactccggaaatcgac
gataacaagccttccaggaaagatggagatcacgacagtgacatggaggaatctgaaaaa
tccaagaaatcatcaaagaaggatcacaatcaccaccaccaccactgctgctgcggggct
cagaatgagcatgagcacacgcatcacgaggagttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGATTCCTCGGATTCATCCG 343 617 529 Antisense
AGAAGCCCGAGGATCTGGAGCGTCG 431 73 668 Antisense
GTCGTCGTCATCGCGTCAAGAAGAC 323 473 689 Antisense
AAGGAGGAGCATCACGAGTCGAACG 709 157 739 Antisense
CAAGGGCTCGGGGAGCTCCAAGTTC 658 181 785 Antisense
GCTGCAGAAGACTCCGGAAATCGAC 226 297 864 Antisense
AATCGACGATAACAAGCCTTCCAGG 156 169 882 Antisense
AAAGAAGGATCACAATCACCACCAC 621 121 963 Antisense
TGCTGCTGCGGGGCTCAGAATGAGC 311 581 994 Antisense
GAATGAGCATGAGCACACGCATCAC 558 331 1011 Antisense
GCACACGCATCACGAGGAGTTCTCA 505 317 1023 Antisense
Sequence Source Affymetrix Proprietary Database