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[184507_at]

Description C34F11.2 /REP_DB=WormBase Gene ID /WP=CE04163 /TR=Q18465 /GB=AAA85764.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.6
(1.8)
A 		3.7
(3)
A 		3.2
(-3)
A 		3.6
(1.8)
A 		1
B 1.5
(-2.6)
A 		5.3
(3)
A 		4.2
(1.4)
A 		1.2
(-3)
A 		4
C 1.4
(-3)
A 		3.6
(3)
A 		3
(1.4)
A 		2.3
(-0.5)
A 		2
avr 2.2
(-3) 		4.2
(3) 		3.5
(0.9) 		2.4
(-2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 2.6
(-2.9)
A 		1.5
(-3)
A 		1.3
(-3)
A 		4.5
(-2.8)
A 		103.8
(3)
A 		101.3
(2.9)
M 		103
B 1.9
(-3)
A 		4.3
(-2.9)
A 		2.4
(-3)
A 		3.1
(-2.9)
A 		122.5
(2.5)
A 		134.1
(3)
P 		132
C 3.6
(-3)
A 		2.7
(-3)
A 		3.4
(-3)
A 		3.2
(-3)
A 		74.6
(0.1)
A 		141.1
(3)
P 		138
avr 2.7
(-3) 		2.8
(-3) 		2.4
(-3) 		3.6
(-2.9) 		100.3
(1.8) 		125.5
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.3
(3)
A 		0.8
(-0.8)
A 		0.8
(-0.8)
A 		0.5
(-3)
A 		1
B 0.5
(-1.8)
A 		1.3
(3)
A 		1
(1.2)
A 		0.3
(-3)
A 		1
C 0.5
(-2.1)
A 		1
(2.1)
A 		1.1
(3)
A 		0.4
(-3)
A 		1
avr 0.8
(1) 		1
(3) 		1
(3) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.5
(-3)
A 		0.3
(-3)
A 		1.1
(-2.8)
A 		31.3
(3)
A 		24.7
(1.7)
M 		31
B 0.7
(-3)
A 		1.4
(-2.9)
A 		0.6
(-3)
A 		0.8
(-3)
A 		49.8
(3)
A 		50
(3)
P 		49
C 1.3
(-2.9)
A 		0.8
(-3)
A 		0.9
(-3)
A 		0.6
(-3)
A 		24.1
(0)
A 		47.2
(3)
P 		47
avr 0.8
(-3) 		0.9
(-3) 		0.6
(-3) 		0.8
(-3) 		35.1
(2.2) 		40.6
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5186
Sequence Type Exemplar sequence
Representative Public ID C34F11.2 NCBI
Target Description C34F11.2 /REP_DB=WormBase Gene ID /WP=CE04163 /TR=Q18465 /GB=AAA85764.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062575 NCBI Caenorhabditis elegans C34F11.2 (C34F11.2) mRNA, complete cds. 11/11 None
SNAP00000021332 ENSEMBL cdna:SNAP chromosome:CEL140:II:5211360:5212716:1 11/11 None
GENEFINDER00000021347 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5212272:5212716:1 11/11 None
C34F11.2 ENSEMBL cdna:known chromosome:CEL140:II:5212272:5212716:1 gene:C34F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5212269-5212714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F11.2
Entrez Gene 183217 Entrez gene
SwissProt Q18465 EMBL-EBI
WormBase CE04163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85764 Hypothetical protein C34F11.2 [Caenorhabditis elegans] ref|NP_494976.1| C34F11.2 [Caenorhabditis elegans] 1.0E-71
blast AAA85764 Hypothetical protein C34F11.2 [Caenorhabditis elegans] ref|NP_494976.1| C34F11.2 [Caenorhabditis elegans] 2.0E-71
blast CAB70229 Hypothetical protein Y73F8A.14 [Caenorhabditis elegans] ref|NP_502849.1| Y73F8A.14 [Caenorhabditis elegans] 4.0E-42
blast CAB70229 Hypothetical protein Y73F8A.14 [Caenorhabditis elegans] ref|NP_502849.1| Y73F8A.14 [Caenorhabditis elegans] 7.0E-42
blast CAB70228 Hypothetical protein Y73F8A.12 [Caenorhabditis elegans] ref|NP_502847.1| Y73F8A.12 [Caenorhabditis elegans] 9.0E-42
Sequence
Target Sequence 
>C. ELEGANS:184507_AT
tccgcctcttcaacacacaaaaagctcgactgagtcaacttcccaaggcttcaaacgaaa
ttgtcaaggattttatttcgaaattggcgaatgcagctggatcccgcgacaaactttctg
actgcttcacgcatgattttcagtttttcggatgcggttatactgttaataaagccccgt
ttgtcgaaaaacatttggccactccgaatcccgagccgttgattccgaaatgctcgagtt
tcaatggaaatgattcaaaaatcagcttcacagcttcacatcaagacggacctcgagaga
atattgtggatctcgttatttcgcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCTCTTCAACACACAAAAAGC 50 597 23 Antisense
AAGCTCGACTGAGTCAACTTCCCAA 285 151 44 Antisense
AATTGGCGAATGCAGCTGGATCCCG 202 177 104 Antisense
CGACAAACTTTCTGACTGCTTCACG 296 251 129 Antisense
TGACTGCTTCACGCATGATTTTCAG 163 571 141 Antisense
GATTTTCAGTTTTTCGGATGCGGTT 421 427 157 Antisense
TATACTGTTAATAAAGCCCCGTTTG 161 629 181 Antisense
GTCGAAAAACATTTGGCCACTCCGA 170 475 205 Antisense
TCCCGAGCCGTTGATTCCGAAATGC 458 593 231 Antisense
CAGCTTCACATCAAGACGGACCTCG 42 205 293 Antisense
TTGTGGATCTCGTTATTTCGCGTGA 120 709 326 Antisense
Sequence Source Affymetrix Proprietary Database