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[184506_at]

Description W10G11.5 /REP_DB=WormBase Gene ID /WP=CE14810 /TR=O44916 /GB=AAG24214.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 90.4
(-3)
A 		92.9
(-2.7)
A 		125.2
(0.8)
A 		145.2
(3)
A 		55
B 71.8
(-3)
A 		119.4
(3)
A 		99.8
(0.5)
A 		86.7
(-1.1)
P 		48
C 62.7
(-3)
A 		122
(2.4)
A 		87.8
(-0.7)
A 		128
(3)
A 		65
avr 75
(-3) 		111.4
(1.9) 		104.3
(0.9) 		120
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 73.7
(-0.5)
A 		69.5
(-1.3)
A 		60.1
(-3)
A 		60
(-3)
A 		72.1
(-0.8)
A 		92.6
(3)
A 		33
B 84.8
(1.7)
A 		82.8
(1.5)
A 		97.6
(3)
M 		71.7
(0.3)
A 		66.8
(-0.2)
M 		39.4
(-3)
A 		58
C 48
(-1.8)
A 		131
(3)
A 		62.6
(-0.9)
A 		26.8
(-3)
A 		71
(-0.5)
A 		83.3
(0.3)
A 		104
avr 68.8
(-0.7) 		94.4
(3) 		73.4
(-0) 		52.8
(-3) 		70
(-0.5) 		71.8
(-0.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 32.9
(3)
A 		20.2
(-3)
A 		32.7
(2.9)
A 		21.3
(-2.5)
A 		13
B 22.9
(-0.6)
A 		29.5
(3)
A 		23.1
(-0.5)
A 		18.5
(-3)
P 		11
C 20.8
(-3)
A 		35.1
(3)
A 		30.6
(1.1)
A 		21.6
(-2.7)
A 		14
avr 25.5
(0.6) 		28.3
(2.6) 		28.8
(3) 		20.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13.6
(-2.7)
A 		24.7
(3)
A 		13.1
(-3)
A 		15.2
(-1.9)
A 		21.8
(1.5)
A 		22.5
(1.9)
A 		12
B 29.5
(3)
A 		27.5
(2.2)
A 		23.7
(0.6)
M 		19
(-1.3)
A 		27.1
(2)
M 		14.7
(-3)
A 		15
C 17.8
(-0.8)
A 		40
(3)
A 		15.9
(-1.2)
A 		5.4
(-3)
A 		23
(0.1)
A 		27.9
(0.9)
A 		35
avr 20.3
(-0.6) 		30.7
(3) 		17.6
(-1.5) 		13.2
(-3) 		24
(0.7) 		21.7
(-0.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5651
Sequence Type Exemplar sequence
Representative Public ID W10G11.5 NCBI
Target Description W10G11.5 /REP_DB=WormBase Gene ID /WP=CE14810 /TR=O44916 /GB=AAG24214.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062179 NCBI Caenorhabditis elegans W10G11.5 (W10G11.5) mRNA, complete cds. 11/11 None
SNAP00000013261 ENSEMBL cdna:SNAP chromosome:CEL140:II:3568111:3569212:-1 11/11 None
GENEFINDER00000013281 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3567994:3571021:-1 11/11 None
W10G11.5 ENSEMBL cdna:known chromosome:CEL140:II:3568111:3569293:-1 gene:W10G11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3568109-3569292(-) 99.61 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.5
Entrez Gene 189338 Entrez gene
SwissProt O44916 EMBL-EBI
WormBase CE14810 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 0.0
blast AAG24214 Hypothetical protein W10G11.5 [Caenorhabditis elegans] ref|NP_494580.1| W10G11.5 [Caenorhabditis elegans] 1.0E-137
blast AAG24214 Hypothetical protein W10G11.5 [Caenorhabditis elegans] ref|NP_494580.1| W10G11.5 [Caenorhabditis elegans] 1.0E-120
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 1.0E-115
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 8.0E-66
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 9.0E-66
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 7.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494580.1 1 13-35
W10G11.5 1 13-35
GENEFINDER00000013281 1 798-820
Sequence
Target Sequence 
>C. ELEGANS:184506_AT
gtcctacaaagcctcggcctatgacaaagcctcgagtcaaagtctgtccctatggttggg
caactttcaatcgaccatcaggaaaatggtgtattaaagtcttcattgggcaccatgctg
ctcaagctgatgctgaggaagcatgccgatcaatcggtacaactcttaccgggcttcaga
acaagcaagaagccctttttattcaaaaatcacttctatctctaattccacaacagagcg
ggtcggtatggcttggacttcagagaaccgcgagatgcatggggcagcctcttacagcaa
cgtgtagccgaactaccgccttcgaatggaccgacaactcggcaaccggtacagatggtt
ttttattccaaactggacagcctgataacggaagactgaatcaaaattgtgcactttttc
ttgcttcaatcgatccctttattgatgcaaggggacggtattatgcggccacatttgaag
atgtcaactgtgtcgcgacctttgttacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTACAAAGCCTCGGCCTATGAC 149 419 488 Antisense
TCGAGTCAAAGTCTGTCCCTATGGT 704 601 519 Antisense
GTTGGGCAACTTTCAATCGACCATC 275 437 542 Antisense
GCACCATGCTGCTCAAGCTGATGCT 685 313 597 Antisense
AAATCACTTCTATCTCTAATTCCAC 440 117 694 Antisense
AGAGCGGGTCGGTATGGCTTGGACT 502 69 722 Antisense
TGCATGGGGCAGCCTCTTACAGCAA 346 577 763 Antisense
AGCAACGTGTAGCCGAACTACCGCC 493 73 783 Antisense
GTGCACTTTTTCTTGCTTCAATCGA 293 481 896 Antisense
AGGGGACGGTATTATGCGGCCACAT 511 55 937 Antisense
CAACTGTGTCGCGACCTTTGTTACG 564 185 972 Antisense
Sequence Source Affymetrix Proprietary Database