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[184505_s_at]

Description Y37A1C.1B /REP_DB=WormBase Gene ID /WP=CE19087 /TR=Q9XTC4 /GB=CAA16318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17.4
(1.9)
A 		8.2
(-2.1)
A 		6.2
(-3)
A 		20
(3)
A 		14
B 28.3
(3)
A 		20.9
(-2.9)
A 		22.3
(-1.8)
A 		20.8
(-3)
A 		8
C 20.2
(-2.5)
A 		27.6
(0.9)
A 		19.2
(-3)
A 		32
(3)
A 		13
avr 22
(1.4) 		18.9
(-0.9) 		15.9
(-3) 		24.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 24.5
(2)
A 		23.6
(1.6)
A 		21.8
(0.9)
A 		14.8
(-1.9)
A 		12.2
(-3)
A 		27
(3)
A 		15
B 19.4
(3)
A 		10.1
(-1.8)
A 		7.8
(-3)
A 		10.3
(-1.7)
A 		10.2
(-1.8)
A 		15
(0.7)
A 		12
C 17.6
(-1.2)
A 		17.9
(-1.2)
A 		7
(-3)
A 		43.2
(3)
A 		10.2
(-2.5)
A 		16
(-1.5)
A 		36
avr 20.5
(1.8) 		17.2
(0.2) 		12.2
(-2.3) 		22.8
(3) 		10.9
(-3) 		19.3
(1.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.3
(3)
A 		1.8
(-2.7)
A 		1.6
(-3)
A 		2.9
(-1.3)
A 		5
B 9
(3)
A 		5.2
(-2)
A 		5.2
(-2)
A 		4.4
(-3)
A 		5
C 6.7
(0.1)
A 		7.9
(3)
A 		6.7
(0.1)
A 		5.4
(-3)
A 		3
avr 7.3
(3) 		5
(-1.5) 		4.5
(-2.4) 		4.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.5
(-2)
A 		8.4
(3)
A 		4.7
(-1.7)
A 		3.8
(-2.9)
A 		3.7
(-3)
A 		6.6
(0.7)
A 		5
B 6.7
(3)
A 		3.4
(-1.1)
A 		1.9
(-3)
A 		2.7
(-2)
A 		4.1
(-0.3)
A 		5.6
(1.6)
A 		5
C 6.5
(1.1)
A 		5.5
(0.2)
A 		1.8
(-3)
A 		8.7
(3)
A 		3.3
(-1.7)
A 		5.4
(0.1)
A 		7
avr 5.9
(3) 		5.8
(2.8) 		2.8
(-3) 		5.1
(1.5) 		3.7
(-1.3) 		5.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184505_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9760
Sequence Type Exemplar sequence
Representative Public ID Y37A1C.1B NCBI
Target Description Y37A1C.1B /REP_DB=WormBase Gene ID /WP=CE19087 /TR=Q9XTC4 /GB=CAA16318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070303(11), NM_070304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070303 NCBI Caenorhabditis elegans Y37A1C.1a (Y37A1C.1) mRNA, complete cds. 11/11 A 
NM_070304 NCBI Caenorhabditis elegans Y37A1C.1b (Y37A1C.1) mRNA, complete cds. 11/11 None
SNAP00000037267 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14114940:14116003:-1 11/11 None
GENEFINDER00000037269 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14114940:14116021:-1 10/11 None
Y37A1C.1a ENSEMBL cdna:known chromosome:CEL140:IV:14110424:14116003:-1 gene:Y37A1C.1 11/11 A 
Y37A1C.1b ENSEMBL cdna:known chromosome:CEL140:IV:14114710:14116003:-1 gene:Y37A1C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14114715-14116009(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1C.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05202 Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] emb|CAA16317.1| Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] ref|NP_502704.1| Y37A1C.1a [Caenorhabditis elegans] 0.0
blast CAE71764 Hypothetical protein CBG18756 [Caenorhabditis briggsae] 0.0
blast AAR97732 Na-K-Cl cotransporter [Oreochromis mossambicus] 1.0E-178
blast CAB05203 Hypothetical protein Y37A1C.1b [Caenorhabditis elegans] emb|CAA16318.1| Hypothetical protein Y37A1C.1b [Caenorhabditis elegans] ref|NP_502705.1| Y37A1C.1b [Caenorhabditis elegans] 1.0E-141
blast CAB05202 Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] emb|CAA16317.1| Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] ref|NP_502704.1| Y37A1C.1a [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR004841 EMBL-EBI Amino acid permease-associated region 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502704.1 11 249-267,282-304,325-347,367-389,396-418,448-470,479-501,548-570,606-628,658-680,682-701
Y37A1C.1a 11 249-267,282-304,325-347,367-389,396-418,448-470,479-501,548-570,606-628,658-680,682-701
Sequence
Target Sequence 
>C. ELEGANS:184505_S_AT
aaaaagtggcagtgagccgcctcctccgactcaaaatcatgaagcagtgacgcttgtgac
gagaaaaatgagtgccactggaagatttatggtaacctctgacacaaatccgggtcaact
cgtcgctgaagtcgctgatgaacttggtattgatgttccgatagatccgccggcggaaaa
atcgccggcttcacgtgctaaaggagtacatttctctgttggagacaaggattccggtag
catgtcggaggatggcgacgagaaacgaaatataacacacgagaatcagacaacgttcaa
tatgaaaagttggagaaatatgaagacgatagagcatccgccgattatcgatttttatcg
gaattcgattgatacagatggggtgttcaacaggccttcgatggctcaacttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGTGGCAGTGAGCCGCCTCCT 659 129 180 Antisense
CTCCTCCGACTCAAAATCATGAAGC 292 235 200 Antisense
TATGGTAACCTCTGACACAAATCCG 613 613 267 Antisense
GACACAAATCCGGGTCAACTCGTCG 121 367 280 Antisense
CTCGTCGCTGAAGTCGCTGATGAAC 658 231 298 Antisense
TTGATGTTCCGATAGATCCGCCGGC 525 703 329 Antisense
GCCGGCTTCACGTGCTAAAGGAGTA 40 281 363 Antisense
GAAGACGATAGAGCATCCGCCGATT 394 339 501 Antisense
GAGCATCCGCCGATTATCGATTTTT 48 389 511 Antisense
AGATGGGGTGTTCAACAGGCCTTCG 586 67 555 Antisense
ACAGGCCTTCGATGGCTCAACTTAT 530 105 569 Antisense
Sequence Source Affymetrix Proprietary Database