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[184504_s_at]

Description Y73C8B.3 /REP_DB=WormBase Gene ID /WP=CE24641 /TR=Q9N4E2 /GB=AAF36046.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 92      6grp_total > 57      4grp_total > 25      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 224.7
(-3)
P 		367.1
(0.6)
P 		310.9
(-0.8)
P 		464.1
(3)
P 		239
B 260.7
(-3)
P 		377.8
(1.3)
P 		330.7
(-0.4)
P 		422.5
(3)
P 		162
C 255.4
(-3)
P 		362.3
(0.5)
P 		405.8
(1.9)
P 		441.3
(3)
P 		186
avr 246.9
(-3) 		369.1
(0.7) 		349.1
(0.1) 		442.6
(3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 306.1
(0.2)
P 		173.5
(-3)
P 		254.2
(-1.1)
P 		216.9
(-2)
P 		185.6
(-2.7)
P 		424.4
(3)
P 		251
B 349.2
(0.1)
P 		229.9
(-2.5)
P 		404.5
(1.2)
P 		224.3
(-2.6)
P 		203.8
(-3)
P 		489.8
(3)
P 		286
C 235.6
(-2.2)
P 		231.1
(-2.2)
P 		172.4
(-3)
P 		310.6
(-1.2)
P 		221.4
(-2.4)
P 		627
(3)
P 		455
avr 297
(-1.2) 		211.5
(-2.8) 		277
(-1.6) 		250.6
(-2.1) 		203.6
(-3) 		513.7
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 81.8
(3)
P 		79.7
(2.1)
P 		81.3
(2.8)
P 		67.9
(-3)
P 		14
B 83.1
(-0.7)
P 		93.3
(3)
P 		76.6
(-3)
P 		90
(1.8)
P 		17
C 84.5
(-2.1)
P 		104.2
(-0.3)
P 		141.4
(3)
P 		74.4
(-3)
P 		67
avr 83.1
(-1.5) 		92.4
(1) 		99.8
(3) 		77.4
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 56.4
(-2.8)
P 		61.7
(-2.2)
P 		55.4
(-3)
P 		55
(-3)
P 		56
(-2.9)
P 		103.3
(3)
P 		48
B 121.5
(0)
P 		76.5
(-2.2)
P 		98.2
(-1.1)
P 		59.4
(-3)
P 		82.8
(-1.9)
P 		182.7
(3)
P 		123
C 87.3
(-1.4)
P 		70.5
(-2)
P 		43.9
(-3)
P 		62.5
(-2.3)
P 		71.6
(-2)
P 		209.9
(3)
P 		166
avr 88.4
(-1.3) 		69.6
(-2.4) 		65.8
(-2.6) 		59
(-3) 		70.1
(-2.4) 		165.3
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184504_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14866
Sequence Type Exemplar sequence
Representative Public ID Y73C8B.3 NCBI
Target Description Y73C8B.3 /REP_DB=WormBase Gene ID /WP=CE24641 /TR=Q9N4E2 /GB=AAF36046.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071477 NCBI Caenorhabditis elegans Y73C8B.3 (Y73C8B.3) mRNA, complete cds. 11/11 A 
SNAP00000021841 ENSEMBL cdna:SNAP chromosome:CEL140:V:3190285:3192957:-1 11/11 None
GENEFINDER00000021851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3191039:3194828:-1 11/11 None
Y73C8B.3 ENSEMBL cdna:known chromosome:CEL140:V:3191250:3192897:-1 gene:Y73C8B.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3191249-3192897(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8B.3
Entrez Gene 178756 Entrez gene
SwissProt Q9N4E2 EMBL-EBI
WormBase CE24641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-175
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-172
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-170
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-167
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-133
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-130
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-128
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184504_S_AT
aatggcgtacatcggtcacagtcgtggatgtgagaatgctcttcagacggctgtggctcg
agatgctcacggaattgtgctcatcaatccgactggtctgaggattcataagggaatcaa
cccgatttctagaatgacaactgtggattcaatttataaaatgctaccattattcctcgg
aaatgccatgatgttgggcgtatataaagcttttggattcaaaatcactactggcgagga
ggccgtcaactcgatgagatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCGTACATCGGTCACAGTCGT 50 163 333 Antisense
GATGTGAGAATGCTCTTCAGACGGC 433 409 359 Antisense
TTCAGACGGCTGTGGCTCGAGATGC 159 685 374 Antisense
GGCTCGAGATGCTCACGGAATTGTG 270 539 387 Antisense
AATTGTGCTCATCAATCCGACTGGT 124 179 405 Antisense
CCGACTGGTCTGAGGATTCATAAGG 702 263 421 Antisense
GGGAATCAACCCGATTTCTAGAATG 80 495 444 Antisense
AAATGCTACCATTATTCCTCGGAAA 426 119 491 Antisense
ATTCCTCGGAAATGCCATGATGTTG 576 7 504 Antisense
ATCACTACTGGCGAGGAGGCCGTCA 636 1 556 Antisense
GAGGCCGTCAACTCGATGAGATCTA 677 405 571 Antisense
Sequence Source Affymetrix Proprietary Database