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[184503_at]

Description Y57G7A.4 /REP_DB=WormBase Gene ID /WP=CE19633 /TR=O76620 /GB=AAC26295.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 42      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4.5
(-3)
A 		26.6
(1.5)
A 		33.7
(3)
A 		7.1
(-2.5)
A 		29
B 2.8
(-3)
A 		6.3
(3)
A 		3.3
(-2.1)
A 		3.8
(-1.3)
A 		4
C 3.6
(-2.9)
A 		41.8
(3)
A 		3.1
(-3)
A 		22.9
(0.1)
A 		39
avr 3.6
(-3) 		24.9
(3) 		13.4
(-0.2) 		11.3
(-0.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.7
(-1.9)
A 		4.1
(-3)
A 		7.1
(-1.7)
A 		8.8
(-0.9)
A 		7.4
(-1.5)
A 		17.7
(3)
A 		14
B 1.3
(-3)
A 		3.3
(-1.4)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		8.8
(3)
A 		1.9
(-2.5)
A 		8
C 2.7
(-2.9)
A 		24.8
(3)
A 		5.8
(-2.1)
A 		2.5
(-3)
A 		6.7
(-1.9)
A 		2.5
(-3)
A 		22
avr 3.6
(-3) 		10.7
(3) 		4.7
(-2.1) 		4.4
(-2.3) 		7.6
(0.4) 		7.4
(0.2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-2.5)
A 		5.8
(0.7)
A 		8.8
(3)
A 		1
(-3)
A 		8
B 0.9
(-2.3)
A 		1.6
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
C 1.2
(-2.9)
A 		12
(3)
A 		1.1
(-3)
A 		3.9
(-1.5)
A 		11
avr 1.3
(-3) 		6.5
(3) 		3.6
(-0.3) 		1.9
(-2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.4
(-2.6)
A 		1.6
(-2.2)
A 		2.2
(-1.1)
A 		2.2
(-1.1)
A 		4.3
(3)
A 		3
B 0.5
(-2.6)
A 		1.1
(-1.5)
A 		0.3
(-3)
A 		0.5
(-2.6)
A 		3.6
(3)
A 		0.7
(-2.3)
A 		3
C 1
(-2.6)
A 		7.6
(3)
A 		1.5
(-2.2)
A 		0.5
(-3)
A 		2.2
(-1.6)
A 		0.8
(-2.7)
A 		7
avr 0.9
(-3) 		3.4
(3) 		1.1
(-2.5) 		1.1
(-2.5) 		2.7
(1.3) 		1.9
(-0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4960
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.4 NCBI
Target Description Y57G7A.4 /REP_DB=WormBase Gene ID /WP=CE19633 /TR=O76620 /GB=AAC26295.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061535
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014162 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1269424:1277407:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061535 7/11 Cross Hyb Matching Probes None
Y57G7A.4 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1269422-1271919(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26295 Serpentine receptor, class w protein 66 [Caenorhabditis elegans] ref|NP_493936.2| Serpentine Receptor, class W family member (srw-66) [Caenorhabditis elegans] 0.0
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-115
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 3.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014162 8 7-29,464-483,490-512,552-571,583-605,661-683,708-730,745-767
Sequence
Target Sequence 
>C. ELEGANS:184503_AT
ctgagagctgcaattgcgctccggcggaaaacttcaacttcaatggggagcaggctggaa
agcacaaaatccgaccaaactacgaaaatggtgattctaatgacagtaacctttacgata
tcagaaggtccaattgggatctgctatatacttgaagggactttaccgaaacgctctgtt
tttcgagatatcaactacgatttgatggatgcttttacaattttcgtggcaatcaacgct
agtgttcactttttgatttgcctaggcgtacattcacagtatcggaaatctgcaaaagaa
ttgctgttttgtgagagaatttataaaaatttgaagacctctaggataagtgtaagttgg
acatttattggaaaatttcaaaaatgcaaattttttacctctcaaaaaatagagaatggg
cttaaaataagtgcattttcacgtgacatccacaacctcccaagaaaatgtacctgcaag
acgaattgctattcaataatctttagaataaacttttcaaaaaaaaacctcccgtcattt
tttgagacagcgaaacccagcagttgtcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAGAGCTGCAATTGCGCTCCGGC 138 239 766 Antisense
GTCCAATTGGGATCTGCTATATACT 409 475 893 Antisense
TGAAGGGACTTTACCGAAACGCTCT 585 383 918 Antisense
GAAACGCTCTGTTTTTCGAGATATC 594 357 933 Antisense
TGGATGCTTTTACAATTTTCGTGGC 77 551 971 Antisense
GGCAATCAACGCTAGTGTTCACTTT 245 535 993 Antisense
ATTTGCCTAGGCGTACATTCACAGT 612 17 1021 Antisense
ATTTTCACGTGACATCCACAACCTC 129 15 1200 Antisense
CAACCTCCCAAGAAAATGTACCTGC 35 183 1218 Antisense
AACCTCCCGTCATTTTTTGAGACAG 381 145 1291 Antisense
CAGCGAAACCCAGCAGTTGTCGGCT 248 201 1313 Antisense
Sequence Source Affymetrix Proprietary Database