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[184502_s_at]

Description C52E12.5 /REP_DB=WormBase Gene ID /WP=CE06970 /TR=Q18781 /GB=AAA93456.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 01      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 20.6
(-2.6)
A 		6.3
(-3)
A 		56.8
(-1.7)
A 		234.5
(3)
A 		228
B 24.1
(-1.9)
A 		11.4
(-3)
A 		35.6
(-0.9)
A 		80.8
(3)
A 		69
C 83.5
(-1.7)
A 		4
(-3)
A 		42.6
(-2.4)
A 		375.4
(3)
M 		371
avr 42.7
(-2) 		7.2
(-3) 		45
(-2) 		230.2
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 15.2
(-0.3)
A 		5.1
(-2.8)
A 		28
(3)
A 		4.5
(-3)
A 		6.8
(-2.4)
A 		11.7
(-1.2)
A 		24
B 24.6
(0.3)
A 		10.8
(-1.9)
A 		41.1
(3)
A 		6.8
(-2.5)
A 		3.9
(-3)
A 		5.6
(-2.7)
A 		37
C 9.7
(-2.6)
A 		78.4
(3)
A 		5.6
(-2.9)
A 		4.8
(-3)
A 		13.2
(-2.3)
A 		31.7
(-0.8)
A 		74
avr 16.5
(-0.4) 		31.4
(3) 		24.9
(1.5) 		5.4
(-3) 		8
(-2.4) 		16.3
(-0.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 7.5
(-1.9)
A 		1.4
(-3)
A 		14.9
(-0.5)
A 		34.3
(3)
A 		33
B 7.7
(-1)
A 		2.8
(-3)
A 		8.2
(-0.8)
A 		17.2
(3)
A 		14
C 27.7
(-0.4)
A 		1.2
(-3)
A 		14.9
(-1.7)
A 		63.3
(3)
M 		62
avr 14.3
(-0.9) 		1.8
(-3) 		12.7
(-1.2) 		38.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.8
(-1)
A 		1.8
(-2.2)
A 		6.1
(3)
A 		1.1
(-3)
A 		2
(-1.9)
A 		2.8
(-1)
A 		5
B 8.6
(2)
A 		3.6
(-1.6)
A 		10
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		2.1
(-2.6)
A 		8
C 3.6
(-2.3)
A 		23.9
(3)
A 		1.4
(-2.9)
A 		1
(-3)
A 		4.3
(-2.1)
A 		10.6
(-0.5)
A 		23
avr 5
(-0.4) 		9.8
(3) 		5.8
(0.2) 		1.3
(-3) 		2.6
(-2.1) 		5.2
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184502_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5641
Sequence Type Exemplar sequence
Representative Public ID C52E12.5 NCBI
Target Description C52E12.5 /REP_DB=WormBase Gene ID /WP=CE06970 /TR=Q18781 /GB=AAA93456.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066105 NCBI Caenorhabditis elegans T07E3.1 (T07E3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000020891 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6917872:6920082:1 11/11 None
T07E3.1 ENSEMBL cdna:known chromosome:CEL140:III:6918313:6920082:1 gene:T07E3.1 11/11 A 
Y60A3A.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:19935266:19939494:1 gene:Y60A3A.11 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036571 6/11 Cross Hyb Matching Probes None
SNAP00000020886 1/11 Cross Hyb Matching Probes None
F25B4.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7020414-7022436(-) 50.59 100.0
Public Domain and Genome References
Ensembl T07E3.1
Y60A3A.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21080 Hypothetical protein T07E3.1 [Caenorhabditis elegans] ref|NP_498506.1| T07E3.1 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 0.0
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 1.0E-162
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.1E-75
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.1E-75
Sequence
Target Sequence 
>C. ELEGANS:184502_S_AT
cagcctttgccgacgatctaaaattactcggatcggaccccacttctatccaaacaagca
tcaatattgtcgctgattggtgtaaaaaatggcgtctaaatcttgctgagcaaaaaactg
ccgtattacactttggtaaaaagaacccccgtcataaatactttgtaaatagtgttgaaa
ttaaaccgcgtaattctatcagagatctcggagtcattgtcgataccaaattatcatttg
taaatcatattaatcagacttctaatagtgccctccttaagtgtcgccaaatccttcgct
cattccgctccaaaagtcccgaattctattttaaactgttcaatgtttacatccgccccg
tactcgaatatggctgcgagctcttcccgcccaactccaccaaacttgccaaaaaaccag
aatctcccctccggtttttctcaaacagcaggctttcacaatttaatttattgtctactc
accacagacgggttcttcaaatcctccgaactttccataaaattatttcaagcgagtatc
acttcccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCTTTGCCGACGATCTAAAATT 516 203 515 Antisense
GATCTAAAATTACTCGGATCGGACC 534 415 529 Antisense
GCATCAATATTGTCGCTGATTGGTG 376 309 572 Antisense
AATGGCGTCTAAATCTTGCTGAGCA 187 163 602 Antisense
TTCTAATAGTGCCCTCCTTAAGTGT 622 609 774 Antisense
TCCTTAAGTGTCGCCAAATCCTTCG 545 589 788 Antisense
CGAATTCTATTTTAAACTGTTCAAT 185 253 834 Antisense
AACTGTTCAATGTTTACATCCGCCC 44 143 848 Antisense
CGCCCCGTACTCGAATATGGCTGCG 106 257 868 Antisense
CTCGAATATGGCTGCGAGCTCTTCC 320 233 877 Antisense
ATTTCAAGCGAGTATCACTTCCCGT 708 15 1039 Antisense
Sequence Source Affymetrix Proprietary Database