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[184500_s_at]

Description C23H5.8B /REP_DB=WormBase Gene ID /WP=CE17441 /TR=O61829 /GB=AAC17536.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 34      6grp_total > 61      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2832
1 2 3 4 range
A 1304.4
(-0.1)
P 		1400.8
(0.1)
P 		2645.5
(3)
P 		91
(-3)
A 		2555
B 1605.8
(0.3)
P 		1477.9
(-0)
P 		2889.3
(3)
P 		69.9
(-3)
A 		2819
C 1438.3
(0.5)
P 		1536.9
(0.7)
P 		2448.5
(3)
P 		57.2
(-3)
A 		2391
avr 1449.5
(0.2) 		1471.9
(0.2) 		2661.1
(3) 		72.7
(-3) 		2588

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1893
1 2 3 4 5 6 range
A 1843.5
(-1.4)
P 		1801.7
(-1.5)
P 		3233.6
(3)
P 		2775.2
(1.5)
P 		2045.4
(-0.8)
P 		1340.9
(-3)
P 		1893
B 1441.8
(-2.7)
P 		2500
(1.1)
P 		3036.9
(3)
P 		2430.9
(0.9)
P 		2389.7
(0.7)
P 		1345
(-3)
P 		1692
C 1423.2
(-3)
P 		2416
(0.3)
P 		2365.3
(0.2)
P 		3215
(3)
P 		1657.3
(-2.2)
P 		1555
(-2.6)
P 		1792
avr 1569.5
(-2.4) 		2239.2
(0.4) 		2878.6
(3) 		2807
(2.7) 		2030.8
(-0.5) 		1413.6
(-3) 		1465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 474.9
(1.1)
P 		304.1
(-0.4)
P 		691.6
(3)
P 		13.3
(-3)
A 		678
B 512.1
(1.6)
P 		365
(0.2)
P 		669.5
(3)
P 		14.9
(-3)
A 		655
C 476.1
(0.3)
P 		441.9
(0.1)
P 		853.4
(3)
P 		9.6
(-3)
A 		844
avr 487.7
(0.9) 		370.3
(-0) 		738.2
(3) 		12.6
(-3) 		726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 644
1 2 3 4 5 6 range
A 339.8
(-2.8)
P 		640.8
(2)
P 		704.2
(3)
P 		703.8
(3)
P 		617.2
(1.6)
P 		326.5
(-3)
P 		378
B 501.7
(-3)
P 		832.1
(1.2)
P 		737.5
(0)
P 		643.9
(-1.2)
P 		970.9
(3)
P 		501.5
(-3)
P 		469
C 527.5
(-2.8)
P 		737.2
(3)
P 		602
(-0.7)
P 		646.5
(0.5)
P 		536.3
(-2.6)
P 		520.5
(-3)
P 		217
avr 456.3
(-2.9) 		736.7
(3) 		681.2
(1.8) 		664.7
(1.5) 		708.1
(2.4) 		449.5
(-3) 		287
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184500_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10385
Sequence Type Exemplar sequence
Representative Public ID C23H5.8B NCBI
Target Description C23H5.8B /REP_DB=WormBase Gene ID /WP=CE17441 /TR=O61829 /GB=AAC17536.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067762(11), NM_067763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067762 NCBI Caenorhabditis elegans C23H5.8a (C23H5.8) mRNA, complete cds. 11/11 A 
NM_067763 NCBI Caenorhabditis elegans C23H5.8b (C23H5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000034543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2103815:2113353:-1 11/11 None
C23H5.8a ENSEMBL cdna:known chromosome:CEL140:IV:2111903:2113392:-1 gene:C23H5.8 11/11 A 
C23H5.8b ENSEMBL cdna:known chromosome:CEL140:IV:2111963:2113371:-1 gene:C23H5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2112385-2113359(-) 100.0 100.0
Public Domain and Genome References
Ensembl C23H5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17534 Hypothetical protein C23H5.7 [Caenorhabditis elegans] ref|NP_500162.1| C23H5.7 [Caenorhabditis elegans] 0.0
blast CAE74702 Hypothetical protein CBG22517 [Caenorhabditis briggsae] 0.0
blast AAF36062 Hypothetical protein Y76B12C.1 [Caenorhabditis elegans] ref|NP_500158.1| Y76B12C.1 [Caenorhabditis elegans] 0.0
blast AAC17535 Hypothetical protein C23H5.8a [Caenorhabditis elegans] ref|NP_500163.1| C23H5.8a [Caenorhabditis elegans] 1.0E-116
blast AAC17536 Hypothetical protein C23H5.8b [Caenorhabditis elegans] ref|NP_500164.1| C23H5.8b [Caenorhabditis elegans] 2.0E-89
blast AAC17535 Hypothetical protein C23H5.8a [Caenorhabditis elegans] ref|NP_500163.1| C23H5.8a [Caenorhabditis elegans] 3.0E-87
blast AAC17536 Hypothetical protein C23H5.8b [Caenorhabditis elegans] ref|NP_500164.1| C23H5.8b [Caenorhabditis elegans] 6.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 5.2E-13
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.9E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034543 4 249-271,278-300,382-404,516-538
Sequence
Target Sequence 
>C. ELEGANS:184500_S_AT
aggaaaatgtgtcctgtcctcagcgccgccaagttggctcagcacaaatggcactggcat
tctcgagtacgcaactgcaggtcatccaacaaatgggacaagtttttgcatagagggtaa
ccacgatcaaaaaactgcccacgttgcatatcatatcgacttgggaagtgaagtattggc
tcccgaatcagtggagcactcattttcagaaaacttgggctcccagaatggatgtgtgaa
caataatactggagtagtgtactgcttcgcaatttgtttgaatgaaactttgcagaatat
ggtcatcgaatctgcgcttaaatcaaatcaaccgtcagttgtggctcaggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAAATGTGTCCTGTCCTCAGCG 323 55 87 Antisense
GGCTCAGCACAAATGGCACTGGCAT 142 539 122 Antisense
CTGGCATTCTCGAGTACGCAACTGC 22 241 140 Antisense
TACGCAACTGCAGGTCATCCAACAA 397 649 154 Antisense
AACTGCCCACGTTGCATATCATATC 21 143 219 Antisense
GTGAAGTATTGGCTCCCGAATCAGT 463 461 254 Antisense
TTTTCAGAAAACTTGGGCTCCCAGA 27 675 289 Antisense
GGAGTAGTGTACTGCTTCGCAATTT 494 515 337 Antisense
ATATGGTCATCGAATCTGCGCTTAA 647 21 383 Antisense
CTGCGCTTAAATCAAATCAACCGTC 633 69 398 Antisense
AACCGTCAGTTGTGGCTCAGGATAT 680 145 416 Antisense
Sequence Source Affymetrix Proprietary Database