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[184499_at]

Description Y50F7A.2 /REP_DB=WormBase Gene ID /WP=CE22322 /TR=Q9TYM5 /GB=AAD12831.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.8
(-2.9)
A 		3.1
(-2.7)
A 		1.5
(-3)
A 		33.7
(3)
A 		32
B 11.2
(-0.3)
A 		21.5
(3)
A 		10.1
(-0.6)
A 		2.5
(-3)
A 		19
C 13.5
(-1)
A 		19.4
(-0.1)
A 		0.3
(-3)
A 		39.2
(3)
A 		39
avr 8.8
(-1.6) 		14.7
(0) 		4
(-3) 		25.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.2
(-3)
A 		16.3
(-0.7)
A 		7.9
(-2.1)
A 		39.7
(3)
A 		7.8
(-2.1)
A 		7.5
(-2.2)
A 		38
B 17.4
(3)
A 		5.7
(-1.6)
A 		9.1
(-0.2)
A 		2
(-3)
A 		9.7
(0)
A 		8.8
(-0.4)
A 		15
C 2.9
(-3)
A 		31.5
(1.9)
A 		37.9
(3)
P 		20.5
(0)
A 		25.9
(0.9)
A 		14.1
(-1.1)
A 		35
avr 7.5
(-3) 		17.8
(1.7) 		18.3
(1.9) 		20.7
(3) 		14.5
(0.2) 		10.1
(-1.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-2.7)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		4.9
(3)
A 		5
B 3.6
(0.9)
A 		5.3
(3)
A 		2.3
(-0.8)
A 		0.5
(-3)
A 		5
C 4.5
(1.1)
A 		5.6
(2.1)
A 		0.1
(-3)
A 		6.6
(3)
A 		7
avr 2.9
(0.9) 		3.9
(2.8) 		0.9
(-3) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.8
(0.3)
A 		1.7
(-2.2)
A 		10.1
(3)
A 		2.4
(-1.8)
A 		1.8
(-2.1)
A 		10
B 6
(3)
A 		1.9
(-1.5)
A 		2.2
(-1.1)
A 		0.5
(-3)
A 		3.9
(0.7)
A 		3.3
(0.1)
A 		6
C 1.1
(-3)
A 		9.6
(3)
A 		9.6
(3)
P 		4.1
(-0.9)
A 		8.4
(2.2)
A 		4.7
(-0.5)
A 		9
avr 2.5
(-3) 		5.8
(3) 		4.5
(0.6) 		4.9
(1.4) 		4.9
(1.4) 		3.3
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5603
Sequence Type Exemplar sequence
Representative Public ID Y50F7A.2 NCBI
Target Description Y50F7A.2 /REP_DB=WormBase Gene ID /WP=CE22322 /TR=Q9TYM5 /GB=AAD12831.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061526 NCBI Caenorhabditis elegans Y50F7A.2 (Y50F7A.2) mRNA, complete cds. 11/11 None
Y50F7A.2 ENSEMBL cdna:known chromosome:CEL140:II:1182863:1184390:1 gene:Y50F7A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1182861-1184389(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50F7A.2
Entrez Gene 190116 Entrez gene
SwissProt Q9TYM5 EMBL-EBI
WormBase CE22322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12831 Hypothetical protein Y50F7A.2 [Caenorhabditis elegans] ref|NP_493927.1| Y50F7A.2 [Caenorhabditis elegans] 8.0E-58
Sequence
Target Sequence 
>C. ELEGANS:184499_AT
gctgtggcgcacagcaccaaagttccagtccccactggagaaaaattttttacagggatt
atctgccgttgggcttcttcttccaattgtccttttatacttccaactttatgcagcttt
tcagatgctagcagattcaaatttcaggaagttctagaaaagttccaaaaatcaatgatt
ttttttaatttaaaaagtggtatttttttccaaaatatttttccatattttttgaaactc
cttaattacgtgtcagaaaatgctaccttaatgctggaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGGCGCACAGCACCAAAGTTC 344 295 16 Antisense
CAAAGTTCCAGTCCCCACTGGAGAA 311 193 33 Antisense
AGGGATTATCTGCCGTTGGGCTTCT 555 57 69 Antisense
TTCTTCTTCCAATTGTCCTTTTATA 65 691 90 Antisense
TGTCCTTTTATACTTCCAACTTTAT 278 557 103 Antisense
ACTTCCAACTTTATGCAGCTTTTCA 57 105 114 Antisense
GCTTTTCAGATGCTAGCAGATTCAA 192 305 131 Antisense
GATGCTAGCAGATTCAAATTTCAGG 292 413 139 Antisense
GAAACTCCTTAATTACGTGTCAGAA 20 357 249 Antisense
TACGTGTCAGAAAATGCTACCTTAA 188 649 262 Antisense
AATGCTACCTTAATGCTGGAAAATT 159 165 274 Antisense
Sequence Source Affymetrix Proprietary Database