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[184497_at]

Description C17G10.5 /REP_DB=WormBase Gene ID /WP=CE06846 /TR=Q09975 /GB=AAB93455.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 27      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5599
1 2 3 4 range
A 7015
(1.5)
P 		7870.8
(2.5)
P 		8312.6
(3)
P 		3028.8
(-3)
P 		5284
B 6630.5
(1.7)
P 		7653.6
(3)
P 		7677.6
(3)
P 		3018.8
(-3)
P 		4659
C 6970.4
(2)
P 		7857.9
(3)
P 		7279.5
(2.3)
P 		2713.3
(-3)
P 		5145
avr 6872
(1.9) 		7794.1
(3) 		7756.6
(3) 		2920.3
(-3) 		4874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4849
1 2 3 4 5 6 range
A 6263
(-1.8)
P 		6900.5
(-1)
P 		10134
(3)
P 		8549.9
(1)
P 		5285.2
(-3)
P 		5930.5
(-2.2)
P 		4849
B 6804.4
(-1.4)
P 		7154
(-0.9)
P 		10057.3
(3)
P 		8439.9
(0.8)
P 		6984
(-1.1)
P 		5582.8
(-3)
P 		4475
C 7057.8
(-1.3)
P 		6705
(-1.8)
P 		9854.4
(3)
P 		7407.5
(-0.7)
P 		6825
(-1.6)
P 		5906.4
(-3)
P 		3948
avr 6708.4
(-1.7) 		6919.8
(-1.4) 		10015.2
(3) 		8132.4
(0.3) 		6364.7
(-2.2) 		5806.6
(-3) 		4209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2111
1 2 3 4 range
A 2554.2
(3)
P 		1708.5
(0.6)
P 		2173.1
(1.9)
P 		443.4
(-3)
P 		2111
B 2114.4
(3)
P 		1890.3
(2.1)
P 		1779.1
(1.6)
P 		643.3
(-3)
P 		1471
C 2307.4
(2.3)
P 		2259.2
(2.2)
P 		2537.1
(3)
P 		457.5
(-3)
P 		2080
avr 2325.3
(3) 		1952.7
(1.8) 		2163.1
(2.5) 		514.7
(-3) 		1811

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1683
1 2 3 4 5 6 range
A 1154.5
(-3)
P 		2454.1
(3)
P 		2207
(1.9)
P 		2168.5
(1.7)
P 		1594.8
(-1)
P 		1443.9
(-1.7)
P 		1300
B 2367.6
(-0.7)
P 		2381.3
(-0.6)
P 		2442.2
(-0.1)
P 		2235.4
(-1.8)
P 		2837.5
(3)
P 		2081.8
(-3)
P 		756
C 2616
(3)
P 		2045.9
(-0)
P 		2508.1
(2.4)
P 		1489.6
(-3)
P 		2208.5
(0.8)
P 		1977.2
(-0.4)
P 		1126
avr 2046
(-0.7) 		2293.8
(2) 		2385.8
(3) 		1964.5
(-1.6) 		2213.6
(1.1) 		1834.3
(-3) 		552
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5644
Sequence Type Exemplar sequence
Representative Public ID C17G10.5 NCBI
Target Description C17G10.5 /REP_DB=WormBase Gene ID /WP=CE06846 /TR=Q09975 /GB=AAB93455.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062682 NCBI Caenorhabditis elegans LYSozyme family member (lys-8) (lys-8) mRNA, complete cds. 11/11 None
SNAP00000029019 ENSEMBL cdna:SNAP chromosome:CEL140:II:5586149:5587513:1 11/11 None
GENEFINDER00000029035 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5583106:5587513:1 11/11 None
C17G10.5 ENSEMBL cdna:known chromosome:CEL140:II:5586148:5587618:1 gene:C17G10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5586146-5587511(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-8
Ensembl C17G10.5
Entrez Gene 173944 Entrez gene
SwissProt Q09975 EMBL-EBI
WormBase CE06846 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9253 peptidoglycan catabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3796 lysozyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68186 Hypothetical protein C17G10.3 [Caenorhabditis elegans] ref|NP_495082.1| C17G10.3 [Caenorhabditis elegans] 1.0E-167
blast AAB93455 Lysozyme protein 8 [Caenorhabditis elegans] ref|NP_495083.1| LYSozyme family member (lys-8) [Caenorhabditis elegans] 1.0E-142
blast CAE59144 Hypothetical protein CBG02448 [Caenorhabditis briggsae] 1.0E-130
blast CAE59144 Hypothetical protein CBG02448 [Caenorhabditis briggsae] 1.0E-129
blast AAB65267 Lysozyme protein 7 [Caenorhabditis elegans] ref|NP_503972.1| LYSozyme family member (lys-7) [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:184497_AT
gctggacaaggatccttcgacaccaactcctgcaatactattcagaatgcgtataacgct
ggactcggaacagagatctacatgactccacagccggcttcaagcaagcaaggataccaa
caattggatgagatctaccaaggattgactgcaagaggaataacaatcagatctgtatgg
atccaggtcacttctccaaccaactggccaagcaatgctaataacaatgtcaactttatc
aacagtattgtgtcaagagctagacaatatggaatgactgtcggaatctacacttcctac
tacgactggaaccagatcaccaacggatggagcagcattggaaatgatgttctcctctgg
tactggaatgtccttggaggtggtgtcaatggagagaccccggccagttttgctgatttc
cgcgcgttcggatgctggactactccatctgtcaaacaattcgctcaagttgagcaagtt
tgccagttcactgtcaacagagatgtttatgctgctggaactatgctcaaggccgctgac
gctgttgaagaggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGACAAGGATCCTTCGACACCA 637 293 277 Antisense
ACACCAACTCCTGCAATACTATTCA 402 109 296 Antisense
TCCACAGCCGGCTTCAAGCAAGCAA 367 587 363 Antisense
CTGTATGGATCCAGGTCACTTCTCC 658 239 449 Antisense
TTCTCCAACCAACTGGCCAAGCAAT 50 693 468 Antisense
TGGTGTCAATGGAGAGACCCCGGCC 276 549 657 Antisense
TTCCGCGCGTTCGGATGCTGGACTA 110 699 694 Antisense
CTGGACTACTCCATCTGTCAAACAA 487 241 711 Antisense
GAGCAAGTTTGCCAGTTCACTGTCA 202 391 748 Antisense
TGCTGGAACTATGCTCAAGGCCGCT 99 583 789 Antisense
GCCGCTGACGCTGTTGAAGAGGATG 679 285 808 Antisense
Sequence Source Affymetrix Proprietary Database