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[184496_s_at]

Description W07B3.2C /REP_DB=WormBase Gene ID /WP=CE17292 /TR=Q9TZ38 /GB=AAC68910.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 04      4grp_high_8_8 > 29      6grp_highest_nonorm > 40      6grp_total > 25      4grp_total > 34      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 710.7
(-3)
P 		890.1
(0.5)
P 		710.5
(-3)
P 		1022.3
(3)
P 		312
B 693.1
(-3)
P 		907
(3)
P 		895.1
(2.7)
P 		886
(2.4)
P 		214
C 642
(-3)
P 		973.5
(3)
P 		726.1
(-1.5)
P 		748.2
(-1.1)
P 		332
avr 681.9
(-3) 		923.5
(3) 		777.2
(-0.6) 		885.5
(2.1) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 785
1 2 3 4 5 6 range
A 745.8
(-0.2)
P 		1084.9
(3)
P 		458.7
(-2.9)
P 		603.6
(-1.5)
P 		443.6
(-3)
P 		690.1
(-0.7)
P 		641
B 905.1
(3)
P 		813.3
(1.8)
P 		674.9
(-0)
P 		567.9
(-1.4)
P 		447.2
(-3)
P 		543.5
(-1.7)
P 		458
C 1228.2
(3)
P 		740.1
(-0.8)
P 		720.4
(-0.9)
P 		491.1
(-2.7)
P 		600.8
(-1.8)
P 		448.6
(-3)
P 		780
avr 959.7
(3) 		879.4
(2) 		618
(-1.4) 		554.2
(-2.3) 		497.2
(-3) 		560.7
(-2.2) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 258.8
(3)
P 		193.2
(-0.6)
P 		185.7
(-1)
P 		149.6
(-3)
P 		109
B 221
(2.5)
P 		224
(3)
P 		207.4
(0.2)
P 		188.8
(-3)
P 		35
C 212.5
(0.4)
P 		279.9
(3)
P 		253.1
(2)
P 		126.2
(-3)
P 		154
avr 230.8
(2.9) 		232.4
(3) 		215.4
(1.7) 		154.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 137.5
(-2.2)
P 		385.8
(3)
P 		99.9
(-3)
P 		153.1
(-1.9)
P 		133.9
(-2.3)
P 		168
(-1.6)
P 		286
B 314.9
(3)
P 		270.7
(1.4)
P 		163.9
(-2.5)
P 		150.4
(-3)
P 		181.7
(-1.9)
P 		202.7
(-1.1)
P 		165
C 455.2
(3)
P 		225.8
(-0.9)
P 		183.4
(-1.6)
P 		98.8
(-3)
P 		194.4
(-1.4)
P 		150.2
(-2.1)
P 		356
avr 302.5
(3) 		294.1
(2.7) 		149.1
(-2.5) 		134.1
(-3) 		170
(-1.7) 		173.6
(-1.6) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184496_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8229
Sequence Type Exemplar sequence
Representative Public ID W07B3.2C NCBI
Target Description W07B3.2C /REP_DB=WormBase Gene ID /WP=CE17292 /TR=Q9TZ38 /GB=AAC68910.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064787(11), NM_064788(11), NM_064789(11), NM_001027640(11), NM_181925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064787 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
NM_064788 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
NM_064789 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
NM_001027640 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 None
NM_181925 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
SNAP00000043170 ENSEMBL cdna:SNAP chromosome:CEL140:III:344938:348145:-1 10/11 None
GENEFINDER00000043172 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:344938:348399:-1 11/11 None
W07B3.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:344213:348432:-1 gene:W07B3.2 11/11 None
W07B3.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:344306:348426:-1 gene:W07B3.2 11/11 None
W07B3.2d.1 ENSEMBL cdna:known chromosome:CEL140:III:344807:346884:-1 gene:W07B3.2 11/11 A 
W07B3.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:344814:348608:-1 gene:W07B3.2 11/11 None
W07B3.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:344814:348426:-1 gene:W07B3.2 11/11 None
W07B3.2f ENSEMBL cdna:known chromosome:CEL140:III:344938:348426:-1 gene:W07B3.2 11/11 None
W07B3.2b ENSEMBL cdna:known chromosome:CEL140:III:344938:348399:-1 gene:W07B3.2 11/11 A 
W07B3.2d.2 ENSEMBL cdna:known chromosome:CEL140:III:344938:347439:-1 gene:W07B3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175195 6 5 NM_001027640 172126_x_at (11), 184496_s_at (11)
NM_064787 172126_x_at (11), 174934_at (11), 184496_s_at (11)
NM_064788 172126_x_at (10), 184496_s_at (11)
NM_064789 172126_x_at (11), 184496_s_at (11)
NM_181925 172126_x_at (10), 184496_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:344937-348399(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07B3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68913 Gex interacting protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_497188.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAU20837 Gex interacting protein protein 4, isoform f [Caenorhabditis elegans] ref|NP_001022811.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAC68910 Gex interacting protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_497190.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAP82634 Gex interacting protein protein 4, isoform c [Caenorhabditis elegans] ref|NP_497189.2| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184496_S_AT
cgtgctcagcagattgtggtccgaaacgcgaaacgagccgaagcggcacgtcttcgctac
cagcgaatgacgcctgatcagagaaagtcgtacaatcaaaaacgctacactccaaagcgt
cgtcgcaacgagatggacgacatgatcagcgccggacagatggccgtcggatcctctgga
accatcacaatgggcaccggcacccccgccaaaaaggacgatatggacgctctctcctcg
ttggaacgtgacgtcgtcaagcgcacacagcacgctcagcagatccttctccgacaacgc
gcgaatcagtcgtcgggaacgccacgctcggttacaccaccgccacaggcctatataatc
tcgaatggtcagcaacagcaccaacagttggttggaaatcagggaaacaatgggattgga
cagcaccaggtgctccatcaaggacacatgcaacagcagcagattcaggtgtcacaccag
cagtcgtcccaatcgattcctcagaacatctacacttctggcatgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGCTCAGCAGATTGTGGTCCGAA 655 245 1018 Antisense
CGCTACCAGCGAATGACGCCTGATC 619 253 1072 Antisense
CACTCCAAAGCGTCGTCGCAACGAG 639 197 1125 Antisense
TGATCAGCGCCGGACAGATGGCCGT 115 565 1160 Antisense
AAGGACGATATGGACGCTCTCTCCT 374 161 1231 Antisense
CTCTCTCCTCGTTGGAACGTGACGT 505 231 1247 Antisense
ACAACGCGCGAATCAGTCGTCGGGA 260 111 1311 Antisense
ACCGCCACAGGCCTATATAATCTCG 670 89 1356 Antisense
ACCAGGTGCTCCATCAAGGACACAT 112 85 1442 Antisense
CAGCAGCAGATTCAGGTGTCACACC 208 205 1471 Antisense
GAACATCTACACTTCTGGCATGATT 345 351 1521 Antisense
Sequence Source Affymetrix Proprietary Database