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[184494_at]

Description ZC204.13 /REP_DB=WormBase Gene ID /WP=CE15108 /TR=P91545 /GB=AAB37919.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 6.2
(-3)
A 		33.8
(-1.3)
A 		7.9
(-2.9)
A 		102.5
(3)
A 		96
B 8.4
(-2.9)
A 		68
(3)
A 		9
(-2.8)
A 		7.1
(-3)
A 		61
C 7.8
(-2.8)
A 		43.7
(-0.8)
A 		3.2
(-3)
A 		116
(3)
A 		113
avr 7.5
(-2.9) 		48.5
(0.7) 		6.7
(-3) 		75.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 35.4
(3)
A 		6.2
(-2.6)
A 		22.6
(0.6)
A 		7
(-2.4)
A 		4
(-3)
A 		8.1
(-2.2)
A 		31
B 9
(-2.3)
A 		11.6
(-1.6)
A 		11.7
(-1.6)
A 		28.1
(3)
A 		6.6
(-3)
A 		23.5
(1.7)
A 		22
C 29.6
(0.2)
A 		53
(3)
A 		7.9
(-2.5)
A 		3.5
(-3)
A 		10.4
(-2.2)
A 		7.3
(-2.5)
A 		50
avr 24.7
(3) 		23.6
(2.6) 		14.1
(-0.6) 		12.9
(-1) 		7
(-3) 		13
(-1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.3
(-2.9)
A 		7.3
(-0.6)
A 		2.1
(-3)
A 		15
(3)
A 		13
B 2.7
(-2.5)
A 		16.8
(3)
A 		2.1
(-2.8)
A 		1.5
(-3)
A 		15
C 2.6
(-2.5)
A 		12.6
(0.7)
A 		1.1
(-3)
A 		19.6
(3)
A 		19
avr 2.5
(-2.6) 		12.2
(3) 		1.8
(-3) 		12
(2.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.5
(3)
A 		2.2
(-1.9)
A 		4.9
(1.2)
A 		1.8
(-2.3)
A 		1.2
(-3)
A 		2
(-2.1)
A 		5
B 3.1
(-2.6)
A 		3.9
(-1.8)
A 		2.8
(-2.9)
A 		7.4
(1.6)
A 		2.7
(-3)
A 		8.8
(3)
A 		6
C 11
(1)
A 		16.2
(3)
A 		2
(-2.5)
A 		0.7
(-3)
A 		3.4
(-2)
A 		2.4
(-2.3)
A 		16
avr 6.9
(2.4) 		7.4
(3) 		3.2
(-2) 		3.3
(-1.9) 		2.4
(-3) 		4.4
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5114
Sequence Type Exemplar sequence
Representative Public ID ZC204.13 NCBI
Target Description ZC204.13 /REP_DB=WormBase Gene ID /WP=CE15108 /TR=P91545 /GB=AAB37919.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061629 NCBI Caenorhabditis elegans ZC204.13 (ZC204.13) mRNA, complete cds. 11/11 None
SNAP00000031417 ENSEMBL cdna:SNAP chromosome:CEL140:II:1660477:1660964:-1 9/11 None
GENEFINDER00000031431 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1660477:1660964:-1 9/11 None
ZC204.13 ENSEMBL cdna:known chromosome:CEL140:II:1660477:1660991:-1 gene:ZC204.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1660475-1660990(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.13
Entrez Gene 191116 Entrez gene
SwissProt P91545 EMBL-EBI
WormBase CE15108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37919 Hypothetical protein ZC204.13 [Caenorhabditis elegans] ref|NP_494030.1| ZC204.13 [Caenorhabditis elegans] 4.0E-75
blast AAB37919 Hypothetical protein ZC204.13 [Caenorhabditis elegans] ref|NP_494030.1| ZC204.13 [Caenorhabditis elegans] 2.0E-70
blast AAB37918 Hypothetical protein ZC204.12 [Caenorhabditis elegans] ref|NP_494029.1| ZC204.12 [Caenorhabditis elegans] 1.0E-35
blast AAB37918 Hypothetical protein ZC204.12 [Caenorhabditis elegans] ref|NP_494029.1| ZC204.12 [Caenorhabditis elegans] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:184494_AT
tctctgcaagaggttatggccgctgtaaacactccagaacccgtcaaactagaagcaatt
ttcgacggtgcattaaagtggaataagaagacatttaaggacaaaggcacactcacttgg
tggttggaacttgaacttaccgatgatgatttctgcatttccgcattctttaaaggagct
tctaaaatgaaaattagtatcgaggctgaattcaaacttttatatccagctcaagaacca
ctcataaaagaggaaaaaaaagatttcgattgtacaaataagagaaataaatacgaagtt
cgcaccatgttcactgaagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTGCAAGAGGTTATGGCCGCTG 54 613 25 Antisense
TATGGCCGCTGTAAACACTCCAGAA 64 655 39 Antisense
ACTCCAGAACCCGTCAAACTAGAAG 101 97 55 Antisense
GAAGCAATTTTCGACGGTGCATTAA 54 341 76 Antisense
GGCACACTCACTTGGTGGTTGGAAC 325 533 130 Antisense
GAACTTGAACTTACCGATGATGATT 686 349 151 Antisense
GATGATTTCTGCATTTCCGCATTCT 308 411 169 Antisense
TCTGCATTTCCGCATTCTTTAAAGG 550 609 176 Antisense
TATATCCAGCTCAAGAACCACTCAT 647 661 245 Antisense
ATACGAAGTTCGCACCATGTTCACT 449 23 315 Antisense
GTTCGCACCATGTTCACTGAAGATG 6 443 322 Antisense
Sequence Source Affymetrix Proprietary Database