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[184493_at]

Description M01E11.1 /REP_DB=WormBase Gene ID /WP=CE12288 /TR=P91402 /GB=AAB37832.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_high_8_8 > 58      6grp_highest_nonorm > 92      6grp_total > 85      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 181.1
(1.4)
P 		212.6
(3)
P 		211.1
(2.9)
P 		97.8
(-3)
A 		115
B 269.9
(3)
P 		140.1
(-2.9)
P 		156.9
(-2.1)
P 		137.6
(-3)
P 		132
C 176.2
(0.2)
P 		206.6
(1.8)
P 		229
(3)
P 		114.2
(-3)
A 		115
avr 209.1
(3) 		186.4
(1.5) 		199
(2.3) 		116.5
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 303.3
(1)
P 		197.3
(-3)
P 		240.4
(-1.4)
P 		284.1
(0.3)
P 		335.7
(2.3)
P 		355.2
(3)
P 		158
B 210.2
(-3)
P 		216.7
(-2.8)
P 		236.7
(-2.1)
P 		313.2
(0.4)
P 		305.4
(0.2)
P 		389.4
(3)
P 		179
C 186.8
(-3)
P 		229.2
(-1.6)
P 		236.1
(-1.4)
P 		355.2
(2.5)
P 		284.1
(0.2)
P 		370.3
(3)
P 		184
avr 233.4
(-2.3) 		214.4
(-3) 		237.7
(-2.1) 		317.5
(0.9) 		308.4
(0.6) 		371.6
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 65.9
(3)
P 		46.1
(0.7)
P 		55.2
(1.8)
P 		14.3
(-3)
A 		52
B 86.1
(3)
P 		34.6
(-2.4)
P 		36.4
(-2.3)
P 		29.3
(-3)
P 		57
C 58.3
(0.9)
P 		59.4
(1)
P 		79.8
(3)
P 		19.3
(-3)
A 		61
avr 70.1
(3) 		46.7
(0.1) 		57.1
(1.4) 		21
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 55.9
(-2.6)
P 		70.2
(-0.8)
P 		52.4
(-3)
P 		72
(-0.6)
P 		101.3
(3)
P 		86.5
(1.2)
P 		49
B 73.1
(-1.9)
P 		72.1
(-2)
P 		57.5
(-3)
P 		83
(-1.3)
P 		124.1
(1.6)
P 		145.2
(3)
P 		88
C 69.2
(-2.1)
P 		69.9
(-2.1)
P 		60.1
(-3)
P 		71.4
(-1.9)
P 		91.9
(-0)
P 		124
(3)
P 		64
avr 66.1
(-2.1) 		70.7
(-1.6) 		56.7
(-3) 		75.5
(-1.2) 		105.8
(1.8) 		118.6
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1910
Sequence Type Exemplar sequence
Representative Public ID M01E11.1 NCBI
Target Description M01E11.1 /REP_DB=WormBase Gene ID /WP=CE12288 /TR=P91402 /GB=AAB37832.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059234 NCBI Caenorhabditis elegans M01E11.1 (M01E11.1) mRNA, complete cds. 11/11 None
SNAP00000002376 ENSEMBL cdna:SNAP chromosome:CEL140:I:5582105:5583266:1 11/11 None
GENEFINDER00000002385 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5582105:5583266:1 11/11 None
M01E11.1 ENSEMBL cdna:known chromosome:CEL140:I:5582105:5583266:1 gene:M01E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5582104-5583266(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E11.1
Entrez Gene 187374 Entrez gene
SwissProt P91402 EMBL-EBI
WormBase CE12288 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249853_AT isoprenylcysteine carboxyl methyltransferase family protein / ICMT family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6481 C-terminal protein amino acid methylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4671 protein-S-isoprenylcysteine O-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37832 Hypothetical protein M01E11.1 [Caenorhabditis elegans] ref|NP_491635.1| M01E11.1 [Caenorhabditis elegans] 1.0E-159
blast CAE68916 Hypothetical protein CBG14895 [Caenorhabditis briggsae] 1.0E-124
blast AAB42280 Hypothetical protein F21F3.3 [Caenorhabditis elegans] ref|NP_491473.1| F21F3.3 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR007269 EMBL-EBI Isoprenylcysteine carboxyl methyltransferase 1.6E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491635.1 7 25-42,47-64,74-96,103-125,140-162,169-191,227-249
M01E11.1 7 25-42,47-64,74-96,103-125,140-162,169-191,227-249
SNAP00000002376 7 25-42,47-64,74-96,103-125,140-162,169-191,227-249
GENEFINDER00000002385 7 25-42,47-64,74-96,103-125,140-162,169-191,227-249
Sequence
Target Sequence 
>C. ELEGANS:184493_AT
gtgagcctggcttattcagtatcccatgaaggagaagtattagaacatttatcccattat
ttcttgtttctctcaatgtttcacttcaccgaattcgtcttcacagcactcacaaatcgg
cgaacactgcgacctgattcatttttattgaatcattctgttggatattggttggctgct
agcattagttggattgaatttttgatcgaggcatacttcttcccagaaatcaaaatgcgt
gggattctttggattggaacattaggatgtattatcggagaaatatttagaaaagttgga
atggttcatgctggtttggcattcactcatcgattagcaatgaccaaaagatcagatcac
agacttgtaaaagatggaatctacgcttatttgcgacatcctggatattttggttggttc
ttatgggccgtttccactcaaataatcctttgcaatcctatttgctgtgtggtttatgcc
tatgtgacatggcacttcttcgcctccagaatctatgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCCTGGCTTATTCAGTATCCC 276 483 274 Antisense
TTCTCTCAATGTTTCACTTCACCGA 659 691 341 Antisense
GTCTTCACAGCACTCACAAATCGGC 234 469 370 Antisense
AAATCGGCGAACACTGCGACCTGAT 116 117 387 Antisense
TTTGATCGAGGCATACTTCTTCCCA 192 665 474 Antisense
TGGCATTCACTCATCGATTAGCAAT 699 545 590 Antisense
CGCTTATTTGCGACATCCTGGATAT 463 253 657 Antisense
TCTTATGGGCCGTTTCCACTCAAAT 121 617 692 Antisense
CAATCCTATTTGCTGTGTGGTTTAT 144 183 726 Antisense
TATGTGACATGGCACTTCTTCGCCT 552 655 754 Antisense
TCTTCGCCTCCAGAATCTATGACGA 662 617 770 Antisense
Sequence Source Affymetrix Proprietary Database