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[184492_s_at]

Description Y106G6E.3 /REP_DB=WormBase Gene ID /WP=CE20407 /TR=Q9XWE4 /GB=CAA21730.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.2
(-3)
A 		15.4
(-0.8)
A 		7.1
(-2.2)
A 		38
(3)
A 		36
B 10.6
(3)
A 		3.5
(-2.3)
A 		3.9
(-2)
A 		2.6
(-3)
A 		8
C 1.7
(-3)
A 		3.7
(-1.4)
A 		6.1
(0.5)
A 		9.2
(3)
A 		8
avr 4.8
(-3) 		7.5
(-1.6) 		5.7
(-2.5) 		16.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 4.5
(-2.9)
A 		2.5
(-3)
A 		29.4
(-1.2)
A 		33.8
(-0.9)
A 		62.4
(1)
A 		91.7
(3)
A 		89
B 3.9
(-3)
A 		39.2
(-0.4)
A 		39
(-0.5)
A 		5.1
(-2.9)
A 		86.5
(3)
P 		82.8
(2.7)
P 		83
C 15.9
(-1.9)
A 		33.7
(-0.4)
A 		2.4
(-3)
A 		10.3
(-2.3)
A 		68.3
(2.5)
A 		74.2
(3)
P 		72
avr 8.1
(-3) 		25.1
(-1.6) 		23.6
(-1.8) 		16.4
(-2.3) 		72.4
(2.2) 		82.9
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-3)
A 		3.4
(0.3)
A 		1.9
(-1.6)
A 		5.6
(3)
A 		5
B 3.4
(3)
A 		0.9
(-2.2)
A 		0.9
(-2.2)
A 		0.5
(-3)
A 		3
C 0.6
(-3)
A 		1.1
(-1)
A 		2.1
(3)
A 		1.5
(0.6)
A 		2
avr 1.6
(-3) 		1.8
(-1.7) 		1.6
(-3) 		2.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.9
(-3)
A 		6.4
(-1.4)
A 		8.6
(-0.8)
A 		18.8
(2)
A 		22.3
(3)
A 		22
B 1.3
(-3)
A 		13
(-0.9)
A 		9.5
(-1.5)
A 		1.4
(-3)
A 		35.1
(3)
P 		30.9
(2.3)
P 		34
C 5.9
(-1.7)
A 		10.3
(-0.6)
A 		0.6
(-3)
A 		2.1
(-2.6)
A 		22.1
(2.3)
A 		24.8
(3)
P 		24
avr 2.7
(-3) 		8.1
(-1.6) 		5.5
(-2.3) 		4
(-2.7) 		25.3
(2.8) 		26
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184492_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18817
Sequence Type Exemplar sequence
Representative Public ID Y106G6E.3 NCBI
Target Description Y106G6E.3 /REP_DB=WormBase Gene ID /WP=CE20407 /TR=Q9XWE4 /GB=CAA21730.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060255(11), NM_060290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060255 NCBI Caenorhabditis elegans B0379.2 (B0379.2) mRNA, complete cds. 11/11 None
NM_060290 NCBI Caenorhabditis elegans Y106G6E.3 (Y106G6E.3) mRNA, complete cds. 11/11 None
SNAP00000021506 ENSEMBL cdna:SNAP chromosome:CEL140:I:10079043:10079906:-1 11/11 None
GENEFINDER00000021514 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10079043:10082149:-1 11/11 None
GENEFINDER00000023698 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10228419:10229373:1 9/11 None
B0379.2 ENSEMBL cdna:known chromosome:CEL140:I:10079043:10079906:-1 gene:B0379.2 11/11 None
Y106G6E.3 ENSEMBL cdna:known chromosome:CEL140:I:10228483:10229373:1 gene:Y106G6E.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023676 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10228413-10229304(+) 100.0 100.0
chrI:10079011-10079806(-) 95.54 95.54
Public Domain and Genome References
Gene Title

Ensembl B0379.2
Y106G6E.3
Entrez Gene 181943 Entrez gene
190921 Entrez gene
SwissProt O02203 EMBL-EBI
Q9XWE4 EMBL-EBI
WormBase CE07725 Wormbase
CE20407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54186 Hypothetical protein B0379.7 [Caenorhabditis elegans] ref|NP_740910.1| B0379.7 [Caenorhabditis elegans] 1.0E-118
blast T18723 hypothetical protein B0379.7 - Caenorhabditis elegans 1.0E-115
blast CAA21730 Hypothetical protein Y106G6E.3 [Caenorhabditis elegans] ref|NP_492691.1| Y106G6E.3 [Caenorhabditis elegans] 1.0E-94
blast CAB05891 Hypothetical protein B0379.2 [Caenorhabditis elegans] ref|NP_492656.1| B0379.2 [Caenorhabditis elegans] 3.0E-88
blast CAB05891 Hypothetical protein B0379.2 [Caenorhabditis elegans] ref|NP_492656.1| B0379.2 [Caenorhabditis elegans] 1.0E-87
blast CAB05891 Hypothetical protein B0379.2 [Caenorhabditis elegans] ref|NP_492656.1| B0379.2 [Caenorhabditis elegans] 3.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492656.1 1 4-26
NP_492691.1 1 10-29
B0379.2 1 4-26
Y106G6E.3 1 10-29
SNAP00000021506 1 20-42
GENEFINDER00000021514 1 2-18
Sequence
Target Sequence 
>C. ELEGANS:184492_S_AT
caattgcaacgttcatccttttcgcggcattttgtgcaagtaaaccaaaagaagttagaa
gaagcccagcgagaaaactgacaatgtcaacttctactttggaatctgaaaaggaggaat
tgaacagtgttgagatggttttggcggaagagatcaagaaggaggaaaaggaacctgaaa
aaccattgattaatgagacaatgtcagaagatagaagtgttgcatgtggaaataaaagtg
attcaaaggaactaaaagaaatggcatctccagataaggaaaagaaaaaagaagactcga
aagcagagcaagaattcgtcctcgatgaaaccaatccacattttgcttttcttcttgctg
gagaaaacagagatcctgctcaatcagttcttcacgcaaaaaatgcatttgaacactcga
atggattcatgtggacaatgaagaagagattggcttttgatgaaggttgctggaaacact
tgagccgtagaattggagctattagagcagagggattcgaagtcagagtgaccactcgtc
aagcaagggagaaaaagcaaagtgcggatcgggagaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGCAACGTTCATCCTTTTCGC 6 181 65 Antisense
ATCCTTTTCGCGGCATTTTGTGCAA 399 39 79 Antisense
AGAAGTTAGAAGAAGCCCAGCGAGA 663 73 114 Antisense
ATGTCAACTTCTACTTTGGAATCTG 53 49 148 Antisense
GTGTTGAGATGGTTTTGGCGGAAGA 358 485 191 Antisense
AGCAGAGCAAGAATTCGTCCTCGAT 476 77 366 Antisense
ATTCGTCCTCGATGAAACCAATCCA 382 9 378 Antisense
GAGAAAACAGAGATCCTGCTCAATC 654 391 425 Antisense
CCTGCTCAATCAGTTCTTCACGCAA 258 267 439 Antisense
GGTTGCTGGAAACACTTGAGCCGTA 678 507 529 Antisense
GCAAAGTGCGGATCGGGAGACCAAA 370 315 621 Antisense
Sequence Source Affymetrix Proprietary Database