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[184491_at]

Description C24H12.2 /REP_DB=WormBase Gene ID /WP=CE08357 /TR=O17164 /GB=AAB71198.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 40      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 5.1
(-3)
A 		10.8
(-2.5)
A 		48.3
(0.9)
A 		70.9
(3)
A 		66
B 25.5
(-1.1)
A 		11.1
(-2.5)
A 		65.6
(3)
A 		6.3
(-3)
A 		59
C 42.1
(3)
A 		13.1
(-3)
A 		33.4
(1.2)
A 		13.1
(-3)
A 		29
avr 24.2
(-1) 		11.7
(-3) 		49.1
(3) 		30.1
(-0) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13
(-1.7)
A 		10
(-2.1)
A 		3.7
(-3)
A 		5.8
(-2.7)
A 		47.2
(3)
A 		40.7
(2.1)
A 		44
B 13.4
(3)
A 		6.2
(-1.7)
A 		4.3
(-3)
A 		9.5
(0.4)
A 		11.2
(1.5)
A 		5.8
(-2)
A 		9
C 7.3
(1.5)
A 		5.9
(-0.4)
A 		7.4
(1.6)
A 		7.4
(1.6)
A 		4
(-3)
A 		8.4
(3)
A 		4
avr 11.2
(-0.7) 		7.4
(-2.1) 		5.1
(-3) 		7.6
(-2) 		20.8
(3) 		18.3
(2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.8
(-3)
A 		2.3
(-2.7)
A 		12.6
(3)
A 		10.4
(1.8)
A 		11
B 8.1
(-0.1)
A 		2.7
(-2.4)
A 		15.2
(3)
A 		1.3
(-3)
A 		14
C 13.9
(3)
A 		3.8
(-2.2)
A 		11.7
(1.9)
A 		2.2
(-3)
A 		12
avr 7.9
(-0.1) 		2.9
(-3) 		13.2
(3) 		4.6
(-2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.4
(-2.3)
A 		3.6
(-1.7)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		14.2
(3)
A 		9.9
(1.1)
A 		13
B 4.6
(3)
A 		2.1
(-1.3)
A 		1.1
(-3)
A 		2.5
(-0.6)
A 		4.6
(3)
A 		2.2
(-1.1)
A 		4
C 2.7
(2.6)
A 		1.8
(-1)
A 		1.9
(-0.6)
A 		1.5
(-2.2)
A 		1.3
(-3)
A 		2.8
(3)
A 		2
avr 3.2
(-0.9) 		2.5
(-1.7) 		1.3
(-3) 		1.8
(-2.4) 		6.7
(3) 		5
(1.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4867
Sequence Type Exemplar sequence
Representative Public ID C24H12.2 NCBI
Target Description C24H12.2 /REP_DB=WormBase Gene ID /WP=CE08357 /TR=O17164 /GB=AAB71198.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061334(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061334 NCBI Caenorhabditis elegans C24H12.2 (C24H12.2) mRNA, complete cds. 9/11 None
GENEFINDER00000023838 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:436866:440670:1 9/11 None
C24H12.2 ENSEMBL cdna:known chromosome:CEL140:II:436866:438726:1 gene:C24H12.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023832 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:436865-438726(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.2
Entrez Gene 182867 Entrez gene
SwissProt O17164 EMBL-EBI
WormBase CE36793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71198 Hypothetical protein C24H12.2 [Caenorhabditis elegans] ref|NP_493735.2| C24H12.2 [Caenorhabditis elegans] 9.0E-79
blast AAB71198 Hypothetical protein C24H12.2 [Caenorhabditis elegans] ref|NP_493735.2| C24H12.2 [Caenorhabditis elegans] 2.0E-69
blast AAB71201 Hypothetical protein C24H12.5a [Caenorhabditis elegans] ref|NP_493727.1| C24H12.5a [Caenorhabditis elegans] 1.0E-55
blast AAK68202 Hypothetical protein C24H12.5b [Caenorhabditis elegans] ref|NP_493726.1| C24H12.5b [Caenorhabditis elegans] 1.0E-55
blast AAB71201 Hypothetical protein C24H12.5a [Caenorhabditis elegans] ref|NP_493727.1| C24H12.5a [Caenorhabditis elegans] 1.0E-53
blast AAK68202 Hypothetical protein C24H12.5b [Caenorhabditis elegans] ref|NP_493726.1| C24H12.5b [Caenorhabditis elegans] 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:184491_AT
gaattccgaagaaagtccgctgaaaaaagagcaaaccagcgatgagaacgagagctcgac
gactttcctacttttctcttgttttgttcccattcctcccctattgttattctctctccc
cattcattgtgccgccaccgagcgctttccacaacaacactcatcccaagagactgatcg
tgccggtttccagtttcttgaggtccatggctccaagaaatcatcgactatattcgcaaa
agccggaacccagtgcaccgaatacgtgctgaagctggaaggaggaccggtgctcccgca
ttgtgcagaaatgatgactcagttcatccgctctacgaaattgtgctcgacagaggagaa
gccagtaacaatgcaggttatggatcgacatacgagtcaaggaatgtctgattggacgga
cggtgccaccaattggaatactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCGAAGAAAGTCCGCTGAAA 522 323 51 Antisense
GAACGAGAGCTCGACGACTTTCCTA 505 347 96 Antisense
CCACAACAACACTCATCCCAAGAGA 9 275 199 Antisense
CATCCCAAGAGACTGATCGTGCCGG 200 209 212 Antisense
TGCCGGTTTCCAGTTTCTTGAGGTC 159 585 231 Antisense
GTTTCTTGAGGTCCATGGCTCCAAG 442 449 243 Antisense
CCCAGTGCACCGAATACGTGCTGAA 264 259 299 Antisense
AGCTGGAAGGAGGACCGGTGCTCCC 315 81 323 Antisense
CGCTCTACGAAATTGTGCTCGACAG 320 255 379 Antisense
GATTGGACGGACGGTGCCACCAATT 572 433 460 Antisense
GACGGTGCCACCAATTGGAATACTG 235 377 469 Antisense
Sequence Source Affymetrix Proprietary Database