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[184490_at]

Description Y51H4A.16 /REP_DB=WormBase Gene ID /WP=CE22341 /TR=Q9NAD7 /GB=CAB61148.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.6
(-3)
A 		2.3
(-2.9)
A 		43
(3)
A 		34.4
(1.8)
A 		41
B 4.4
(-3)
A 		4.5
(-3)
A 		6.2
(-2.7)
A 		37.9
(3)
A 		34
C 3.6
(-3)
A 		29.6
(2.7)
A 		31.1
(3)
A 		13.6
(-0.8)
A 		28
avr 3.2
(-3) 		12.1
(-0.9) 		26.8
(2.6) 		28.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.1
(-3)
A 		9.4
(-1.8)
A 		34.4
(3)
A 		19.8
(0.2)
A 		32.9
(2.7)
A 		3.7
(-2.9)
A 		31
B 5.7
(-2.3)
A 		12.1
(-1.3)
A 		2.3
(-2.8)
A 		40.2
(3)
A 		16.7
(-0.6)
A 		1.2
(-3)
A 		39
C 17.9
(3)
A 		4.8
(-1.9)
A 		1.9
(-3)
A 		2.8
(-2.7)
A 		4.4
(-2.1)
A 		2.5
(-2.8)
A 		16
avr 8.9
(-0.9) 		8.8
(-0.9) 		12.9
(0.4) 		20.9
(3) 		18
(2.1) 		2.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		11.2
(3)
A 		5
(-0.5)
A 		11
B 1.4
(-2.7)
A 		1.1
(-3)
A 		1.4
(-2.7)
A 		8.1
(3)
A 		7
C 1.2
(-3)
A 		8.5
(1.6)
A 		10.8
(3)
A 		2.3
(-2.3)
A 		10
avr 1.1
(-3) 		3.4
(-0.9) 		7.8
(3) 		5.1
(0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.3
(-1.3)
A 		7.5
(1.5)
A 		5
(-0.2)
A 		9.9
(3)
A 		0.9
(-2.8)
A 		9
B 2
(-2.1)
A 		4
(-0.9)
A 		0.6
(-2.9)
A 		10.6
(3)
A 		6.8
(0.8)
A 		0.4
(-3)
A 		10
C 6.6
(3)
A 		1.5
(-2)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1.4
(-2.1)
A 		0.8
(-2.7)
A 		6
avr 3.1
(-0.3) 		2.9
(-0.5) 		2.9
(-0.5) 		5.4
(2.3) 		6
(3) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10268
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.16 NCBI
Target Description Y51H4A.16 /REP_DB=WormBase Gene ID /WP=CE22341 /TR=Q9NAD7 /GB=CAB61148.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070572 NCBI Caenorhabditis elegans Y51H4A.16 (Y51H4A.16) mRNA, complete cds. 11/11 None
GENEFINDER00000000209 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16662328:16663975:-1 11/11 None
Y51H4A.16 ENSEMBL cdna:known chromosome:CEL140:IV:16662328:16663975:-1 gene:Y51H4A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16662333-16663981(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.16
Entrez Gene 190152 Entrez gene
SwissProt Q9NAD7 EMBL-EBI
WormBase CE22341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61148 Hypothetical protein Y51H4A.16 [Caenorhabditis elegans] ref|NP_502973.1| Y51H4A.16 [Caenorhabditis elegans] 5.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502973.1 1 98-120
Y51H4A.16 1 98-120
GENEFINDER00000000209 1 98-120
Sequence
Target Sequence 
>C. ELEGANS:184490_AT
gcgaaaactttcaatttgtgcgagttgttgaaagagccgtggctctgcacaagaactcga
aggaaaaaactaatgagaagttgttggctcaaaaaagcggaaaatgggcaagagatgcag
agagcagaaacacttggaaatgtataagagctccaggagcacacacacacacgggagaga
gtatcaaagagagcacagagacgcagacagtgttacacaccgctagacgcagagacttgt
tactcatattcaatatggaaaatgaattgttatcgattatccttctgtattacatcctaa
taagggtcatttacaagcattccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAAAACTTTCAATTTGTGCGAGT 85 289 59 Antisense
GCGAGTTGTTGAAAGAGCCGTGGCT 3 291 78 Antisense
CCGTGGCTCTGCACAAGAACTCGAA 536 265 95 Antisense
AGCACACACACACACGGGAGAGAGT 110 77 216 Antisense
GAGAGCACAGAGACGCAGACAGTGT 143 395 247 Antisense
GACGCAGACAGTGTTACACACCGCT 271 381 258 Antisense
ACACACCGCTAGACGCAGAGACTTG 672 109 273 Antisense
GAGACTTGTTACTCATATTCAATAT 116 393 290 Antisense
GAATTGTTATCGATTATCCTTCTGT 686 323 322 Antisense
CGATTATCCTTCTGTATTACATCCT 589 247 332 Antisense
AAGGGTCATTTACAAGCATTCCAAC 652 149 360 Antisense
Sequence Source Affymetrix Proprietary Database