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[184489_s_at]

Description C50E3.13 /REP_DB=WormBase Gene ID /WP=CE08906 /TR=Q22936 /GB=AAB04891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 28.4
(-0.8)
A 		42.6
(0.6)
A 		66.8
(3)
M 		5.9
(-3)
A 		61
B 22.4
(-3)
A 		57.4
(3)
A 		23.5
(-2.8)
A 		56.1
(2.8)
A 		35
C 52
(0.1)
A 		81.1
(3)
A 		27.8
(-2.4)
A 		21.4
(-3)
A 		60
avr 34.3
(-1.8) 		60.4
(3) 		39.4
(-0.9) 		27.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 38.1
(0.9)
A 		15.1
(-3)
A 		35.5
(0.4)
A 		26.3
(-1.1)
A 		40.6
(1.3)
A 		50.7
(3)
A 		36
B 6.3
(-3)
A 		14.7
(-1.8)
A 		22.3
(-0.8)
A 		18.3
(-1.3)
A 		36.9
(1.3)
A 		49.5
(3)
P 		43
C 22.1
(-3)
A 		49.4
(1.5)
A 		53.2
(2.1)
A 		58.5
(3)
A 		32.2
(-1.3)
A 		44.5
(0.7)
P 		36
avr 22.2
(-3) 		26.4
(-2) 		37
(0.4) 		34.4
(-0.2) 		36.6
(0.3) 		48.2
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 10.3
(0.4)
A 		9.2
(-0)
A 		17.5
(3)
M 		0.9
(-3)
A 		17
B 7.1
(-1.8)
A 		14.2
(3)
A 		5.4
(-3)
A 		11.9
(1.4)
A 		9
C 17.2
(1.1)
A 		23.3
(3)
A 		9.7
(-1.1)
A 		3.6
(-3)
A 		20
avr 11.5
(0.6) 		15.6
(3) 		10.9
(0.2) 		5.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7
(-1.6)
A 		5.4
(-3)
A 		7.7
(-1)
A 		6.7
(-1.9)
A 		12.2
(2.9)
A 		12.3
(3)
A 		7
B 2.2
(-3)
A 		4.9
(-2)
A 		5.4
(-1.8)
A 		4.9
(-2)
A 		15
(1.7)
A 		18.5
(3)
P 		16
C 8.2
(-3)
A 		15.1
(3)
A 		13.5
(1.6)
A 		11.8
(0.1)
A 		10.4
(-1.1)
A 		14.9
(2.8)
P 		7
avr 5.8
(-3) 		8.5
(-1.3) 		8.9
(-1) 		7.8
(-1.7) 		12.5
(1.3) 		15.2
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184489_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11638
Sequence Type Exemplar sequence
Representative Public ID C50E3.13 NCBI
Target Description C50E3.13 /REP_DB=WormBase Gene ID /WP=CE08906 /TR=Q22936 /GB=AAB04891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072568 NCBI Caenorhabditis elegans C50E3.13 (C50E3.13) mRNA, complete cds. 11/11 None
C50E3.13 ENSEMBL cdna:known chromosome:CEL140:V:7624950:7626744:-1 gene:C50E3.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7625118-7626745(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.13
Entrez Gene 179145 Entrez gene
SwissProt Q22936 EMBL-EBI
WormBase CE08906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504969 C50E3.13 [Caenorhabditis elegans] gb|AAB04891.1| Hypothetical protein C50E3.13 [Caenorhabditis elegans] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:184489_S_AT
tgaaccgtgtcgcaaattcctgggaaagacgacgggagccgcatgaacaagcgattcgag
actatgagcgtttagtagctactcgacaacgtaccgaagaagatcgtcgcagggaacgtg
catcaaatcgggccggtccttcgaaccaagaagattacgattctgaggatgaagatgaac
atcatgtcgatgaattaccagatcttcttgagcttctgagtcttgtggtcaaccctgtta
taggtggcggaggaatatcaactaatcgtgcagaatatttaaatccgcgtggaacagaag
gcttgggtgctgatgatcctgatttgaacgatagtggaggaactgtgtatcagagtgacg
aagaggaatcagaggatgaagcagagattgatcatcaggaaggtccatcgaattggaggc
ccaagcgaccacgtcgtgatgatgatgaaggaggatcgggaagcagcgcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCGTGTCGCAAATTCCTGGGA 374 547 644 Antisense
GACGACGGGAGCCGCATGAACAAGC 527 377 671 Antisense
GTAGCTACTCGACAACGTACCGAAG 539 437 718 Antisense
AGGGAACGTGCATCAAATCGGGCCG 488 53 754 Antisense
GATCTTCTTGAGCTTCTGAGTCTTG 617 419 844 Antisense
GAGTCTTGTGGTCAACCCTGTTATA 71 395 861 Antisense
AATCCGCGTGGAACAGAAGGCTTGG 669 167 925 Antisense
GAAGGCTTGGGTGCTGATGATCCTG 516 333 940 Antisense
GGTCCATCGAATTGGAGGCCCAAGC 51 501 1045 Antisense
GCCCAAGCGACCACGTCGTGATGAT 147 285 1062 Antisense
GGAGGATCGGGAAGCAGCGCAAGCA 67 517 1093 Antisense
Sequence Source Affymetrix Proprietary Database