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[184487_at]

Description C33H5.10 /REP_DB=WormBase Gene ID /WP=CE26878 /TR=Q18407 /GB=AAA82269.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 04      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 591.9
(-1.6)
P
590.4
(-1.7)
P
565.8
(-3)
P
680.7
(3)
P
115
B 564.6
(-1.1)
P
525.3
(-2)
P
483
(-3)
P
743.5
(3)
P
261
C 586.7
(-0.6)
P
515.8
(-3)
P
599.8
(-0.2)
P
693.6
(3)
P
178
avr 581.1
(-1.6)
543.8
(-3)
549.5
(-2.8)
705.9
(3)
162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 744.3
(-0.2)
P
547
(-3)
P
819.3
(0.9)
P
840.9
(1.2)
P
966.1
(3)
P
815.9
(0.8)
P
419
B 656.6
(-3)
P
712.5
(-2.1)
P
885.2
(0.6)
P
879.4
(0.5)
P
1042.5
(3)
P
951.3
(1.6)
P
386
C 573.5
(-3)
P
786.7
(-0.5)
P
718.9
(-1.3)
P
1081.3
(3)
P
787.8
(-0.5)
P
930.8
(1.2)
P
508
avr 658.1
(-3)
682.1
(-2.5)
807.8
(0.3)
933.9
(3)
932.1
(3)
899.3
(2.2)
276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 215.5
(3)
P
128.2
(-1.5)
P
147.9
(-0.5)
P
99.6
(-3)
P
116
B 180
(3)
P
129.7
(-1.4)
P
111.9
(-3)
P
158.4
(1.1)
P
68
C 194.2
(2)
P
148.3
(-1)
P
209
(3)
P
117
(-3)
P
92
avr 196.6
(3)
135.4
(-2.1)
156.3
(-0.4)
125
(-3)
72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 137.2
(-3)
P
194.5
(-0.8)
P
178.4
(-1.4)
P
213.3
(-0)
P
291.5
(3)
P
198.7
(-0.6)
P
154
B 228.5
(-2.6)
P
237.2
(-2.4)
P
215
(-3)
P
232.9
(-2.5)
P
423.5
(3)
P
354.7
(1)
P
209
C 212.6
(-1.6)
P
240
(-0.3)
P
183
(-3)
P
217.4
(-1.4)
P
254.9
(0.4)
P
311.6
(3)
P
129
avr 192.8
(-3)
223.9
(-1.5)
192.1
(-3)
221.2
(-1.7)
323.3
(3)
288.3
(1.4)
131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8783
Sequence Type Exemplar sequence
Representative Public ID C33H5.10 NCBI
Target Description C33H5.10 /REP_DB=WormBase Gene ID /WP=CE26878 /TR=Q18407 /GB=AAA82269.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068884(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_068884 NCBI Caenorhabditis elegans C33H5.10 (C33H5.10) mRNA, complete cds. 11/11 None
SNAP00000004479 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7784055:7785537:-1 11/11 None
GENEFINDER00000004496 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7784055:7785537:-1 11/11 None
C33H5.10 ENSEMBL cdna:known chromosome:CEL140:IV:7783967:7785539:-1 gene:C33H5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7784060-7785543(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.10
Entrez Gene 177564 Entrez gene
SwissProt Q18407 EMBL-EBI
WormBase CE26878 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9769.1.S1_AT similar to CG5913-PA cfa
DROSOPHILA_2:1628424_AT dm
DROSGENOME1:150623_AT dm
CHICKEN:GGA.17128.1.S1_S_AT similar to RIKEN cDNA 2810405J04 gga
HG-U133_PLUS_2:241832_AT DKFZP564F0522 protein hs
HG-U133B:241832_AT DKFZP564F0522 protein hs
HU35KSUBA:RC_AA037386_S_AT DKFZP564F0522 protein hs
HU35KSUBA:W52858_AT DKFZP564F0522 protein hs
HU35KSUBC:RC_AA033562_AT DKFZP564F0522 protein hs
U133_X3P:HS.23060.0.S1_3P_AT DKFZP564F0522 protein hs
U133_X3P:HS.211648.0.A1_3P_AT DKFZP564F0522 protein hs
HG-U133A_2:212333_AT DKFZP564F0522 protein hs
HG-U133_PLUS_2:212333_AT DKFZP564F0522 protein hs
HG-U133A:212333_AT DKFZP564F0522 protein hs
HG-U95AV2:33433_AT DKFZP564F0522 protein hs
HG-U95B:59251_AT DKFZP564F0522 protein hs
HG-U95E:71110_AT DKFZP564F0522 protein hs
HG-U133_PLUS_2:239487_AT DKFZP564F0522 protein hs
HG-U133B:239487_AT DKFZP564F0522 protein hs
HG-U95D:90780_AT DKFZP564F0522 protein hs
U133_X3P:HS.131860.0.A1_3P_AT DKFZP564F0522 protein hs
MOE430A:1416445_AT RIKEN cDNA 2810405J04 gene mm
MOUSE430A_2:1416445_AT RIKEN cDNA 2810405J04 gene mm
MOUSE430_2:1416445_AT RIKEN cDNA 2810405J04 gene mm
MG-U74AV2:95451_AT RIKEN cDNA 2810405J04 gene mm
MG-U74CV2:167446_I_AT RIKEN cDNA 2810405J04 gene mm
MOE430B:1459640_AT RIKEN cDNA 2810405J04 gene (2810405J04Rik), mRNA mm
MOUSE430_2:1459640_AT RIKEN cDNA 2810405J04 gene (2810405J04Rik), mRNA mm
MU19KSUBA:TC19326_AT RIKEN cDNA 2810405J04 gene (2810405J04Rik), mRNA mm
MU19KSUBB:TC32841_AT RIKEN cDNA 2810405J04 gene (2810405J04Rik), mRNA mm
RG-U34C:RC_AI171948_AT similar to RIKEN cDNA 2810405J04 (predicted) rn
RAE230A:1373870_AT similar to RIKEN cDNA 2810405J04 (predicted) rn
RAT230_2:1373870_AT similar to RIKEN cDNA 2810405J04 (predicted) rn
RAE230B:1395535_AT similar to RIKEN cDNA 2810405J04 (predicted) rn
RAT230_2:1395535_AT similar to RIKEN cDNA 2810405J04 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA82269 Hypothetical protein C33H5.10 [Caenorhabditis elegans] ref|NP_501285.1| C33H5.10 [Caenorhabditis elegans] 0.0
blast AAA82269 Hypothetical protein C33H5.10 [Caenorhabditis elegans] ref|NP_501285.1| C33H5.10 [Caenorhabditis elegans] 1.0E-176
blast CAE70883 Hypothetical protein CBG17673 [Caenorhabditis briggsae] 1.0E-121
blast CAE70883 Hypothetical protein CBG17673 [Caenorhabditis briggsae] 1.0E-120
blast XP_510292 PREDICTED: hypothetical protein XP_510292 [Pan troglodytes] 3.0E-17
Sequence
Target Sequence
>C. ELEGANS:184487_AT
gatggacgcgtttcccaaagtcaaagacatccacttttcaaagcgactcttgatgaaaat
acacttcctgaaattgaaaaacagtgtgaatcgttttctcgtgatttttacaatcgactt
ctacttctgaacagtcgactcaaggtcacagttgaatcatttttatggaatgatcgcctc
aagatgcacagagagaatattcaatcaattctttctgctcgtgtcgatgaaattggacga
gttaaagcgaacagtgacgtagctcatcttctttctgcaagttcttcattgctctatatt
caaaaagcgtcatctatggatagaagagaacgaacaaaaagcaaacaacatccactttca
attatggatgctccaaaagatcgtggaggacgcacagaagaaatggttggagtgaaacaa
gaatctttcagacaacaacaacatacttttgataggcaacattcccaaaatcgacaaaaa
agtactttcgaccgtccaaaaactcacgaggagcaggttctcgaacaacacacttcacga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GATGGACGCGTTTCCCAAAGTCAAA 188 407 319 Antisense
GACATCCACTTTTCAAAGCGACTCT 563 369 344 Antisense
ACAATCGACTTCTACTTCTGAACAG 68 113 428 Antisense
GAACAGTCGACTCAAGGTCACAGTT 111 351 447 Antisense
GGAATGATCGCCTCAAGATGCACAG 95 533 485 Antisense
AATTCTTTCTGCTCGTGTCGATGAA 406 177 525 Antisense
AACAGTGACGTAGCTCATCTTCTTT 169 137 568 Antisense
CAAGTTCTTCATTGCTCTATATTCA 148 185 596 Antisense
AAGCAAACAACATCCACTTTCAATT 402 147 657 Antisense
TCGACCGTCCAAAAACTCACGAGGA 67 603 806 Antisense
GGTTCTCGAACAACACACTTCACGA 509 507 834 Antisense
Sequence Source Affymetrix Proprietary Database