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[184486_at]

Description F59H6.11 /REP_DB=WormBase Gene ID /WP=CE20917 /TR=Q9N5P8 /GB=AAF39859.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 15      6grp_total > 96      4grp_total > 09      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 18.5
(-3)
A 		61.1
(-0.7)
P 		94.3
(1.1)
P 		128.8
(3)
P 		110
B 34.7
(-3)
A 		69
(-1.8)
P 		63.6
(-2)
P 		205.3
(3)
P 		171
C 49.9
(-2.5)
P 		37.2
(-3)
P 		50.4
(-2.5)
P 		193.8
(3)
P 		157
avr 34.4
(-3) 		55.8
(-2.1) 		69.4
(-1.5) 		176
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 43
(-2.3)
A 		7.1
(-3)
A 		88.3
(-1.5)
P 		161.8
(-0.1)
P 		263.9
(1.7)
P 		332.3
(3)
P 		325
B 26.5
(-3)
A 		33.5
(-2.9)
P 		76.4
(-2.2)
P 		150.8
(-1.1)
P 		316.9
(1.5)
P 		415.2
(3)
P 		389
C 14.8
(-3)
A 		77.8
(-2.2)
P 		64.1
(-2.4)
P 		129.5
(-1.6)
P 		265.2
(0.1)
P 		497.4
(3)
P 		483
avr 28.1
(-3) 		39.5
(-2.8) 		76.3
(-2.3) 		147.4
(-1.1) 		282
(0.9) 		415
(3) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 6.8
(-3)
A 		13.3
(-0.8)
P 		24.7
(3)
P 		18.9
(1.1)
P 		18
B 11.1
(-3)
A 		17.1
(-1.9)
P 		14.7
(-2.3)
P 		43.8
(3)
P 		33
C 16.5
(-1.4)
P 		10.7
(-3)
P 		17.6
(-1.1)
P 		32.7
(3)
P 		22
avr 11.5
(-3) 		13.7
(-2.3) 		19
(-0.8) 		31.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 7.9
(-2.6)
A 		2.5
(-3)
A 		19.2
(-1.7)
P 		41
(-0.1)
P 		79.6
(2.9)
P 		80.9
(3)
P 		78
B 9.2
(-3)
A 		11.2
(-2.9)
P 		18.5
(-2.6)
P 		39.9
(-1.7)
P 		128.8
(1.9)
P 		154.8
(3)
P 		146
C 5.5
(-3)
A 		23.7
(-2.3)
P 		16.3
(-2.6)
P 		26.1
(-2.2)
P 		85.8
(-0)
P 		166.5
(3)
P 		161
avr 7.5
(-3) 		12.5
(-2.8) 		18
(-2.5) 		35.7
(-1.7) 		98.1
(1.3) 		134.1
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5073
Sequence Type Exemplar sequence
Representative Public ID F59H6.11 NCBI
Target Description F59H6.11 /REP_DB=WormBase Gene ID /WP=CE20917 /TR=Q9N5P8 /GB=AAF39859.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061757 NCBI Caenorhabditis elegans F59H6.11 (F59H6.11) mRNA, complete cds. 11/11 None
SNAP00000002431 ENSEMBL cdna:SNAP chromosome:CEL140:II:2030840:2031939:-1 11/11 None
GENEFINDER00000002439 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2030840:2031939:-1 11/11 None
F59H6.11 ENSEMBL cdna:known chromosome:CEL140:II:2030840:2031939:-1 gene:F59H6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2030838-2031938(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-5
Ensembl F59H6.11
Entrez Gene 186650 Entrez gene
SwissProt Q9N5P8 EMBL-EBI
WormBase CE20917 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 1.0E-173
blast NP_494123 F52C6.9 [Caenorhabditis elegans] 1.0E-120
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 4.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 7.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:184486_AT
gggacgcaatgatcaaggattacctgatcgatgacgtcatcatcatggaagccactgtaa
aaatcataaatttgatgggaattccgaagaaaacgctcagaacattcgatgagtcgaacg
aggagttttccgatgtgattctgactgtcgaagacgagaagttctacgttttgaagcagt
tcctcgcctctcattcttcacacttcaagacactctttttgagaaaatgcgaggaagaag
ctgaaaaatcagaatatacacttcaggatatcaactccatcgattttcagaatcttctag
aggtgttgcacggagaaccggctatcgatgaggaaactgttcaaggaattcgtgatttgg
ctgacaagtacgatatgccgttcccaactcgcaaatgcgaggaattccttatcgatttgt
ctgaaaaatcgataaaggagaagcttaaaatcgctaagcaattccagctggagaagttga
agatgcattgtctctcaaaaatcgaaactgtcgatcatatcaaagcggcaatgacaggcg
atccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACGCAATGATCAAGGATTACCT 521 489 326 Antisense
TTCCGATGTGATTCTGACTGTCGAA 337 699 453 Antisense
GGATATCAACTCCATCGATTTTCAG 563 509 591 Antisense
GAATCTTCTAGAGGTGTTGCACGGA 383 325 615 Antisense
GGTGTTGCACGGAGAACCGGCTATC 285 495 627 Antisense
AGGAATTCGTGATTTGGCTGACAAG 421 53 669 Antisense
TGACAAGTACGATATGCCGTTCCCA 109 573 687 Antisense
GAGGAATTCCTTATCGATTTGTCTG 352 405 724 Antisense
AAATCGCTAAGCAATTCCAGCTGGA 175 119 773 Antisense
AACTGTCGATCATATCAAAGCGGCA 321 139 831 Antisense
AAGCGGCAATGACAGGCGATCCAAT 616 147 848 Antisense
Sequence Source Affymetrix Proprietary Database