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[184485_at]

Description F15E11.3 /REP_DB=WormBase Gene ID /WP=CE17001 /TR=O44601 /GB=AAB94200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 41.8
(-3)
A 		51.7
(-2.6)
A 		59.1
(-2.2)
A 		177.9
(3)
A 		136
B 109.1
(1.5)
A 		15.7
(-3)
A 		17.9
(-2.9)
A 		141.2
(3)
A 		126
C 47.5
(-1.2)
A 		13.4
(-2.7)
A 		6.9
(-3)
A 		143
(3)
A 		136
avr 66.1
(-1.1) 		26.9
(-3) 		28
(-2.9) 		154
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 38.6
(-0.4)
A 		10.1
(-3)
A 		75.7
(3)
A 		11.1
(-2.9)
A 		29.9
(-1.2)
A 		13.4
(-2.7)
A 		66
B 13.7
(-2.6)
A 		24.7
(-1.9)
A 		97.4
(3)
A 		10
(-2.9)
A 		63.5
(0.7)
A 		7.8
(-3)
A 		90
C 14.2
(-2.3)
A 		84
(3)
A 		9.3
(-2.7)
A 		25.4
(-1.5)
A 		5.5
(-3)
A 		60.2
(1.2)
A 		79
avr 22.2
(-2.1) 		39.6
(0.2) 		60.8
(3) 		15.5
(-3) 		33
(-0.7) 		27.1
(-1.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 15.2
(-1.4)
A 		11.2
(-3)
A 		15.5
(-1.3)
A 		26
(3)
A 		15
B 34.8
(3)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		30.1
(2.1)
A 		31
C 15.7
(0.7)
A 		3.9
(-2.6)
A 		2.4
(-3)
A 		24.1
(3)
A 		22
avr 21.9
(1.6) 		6.3
(-3) 		7.4
(-2.7) 		26.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.1
(-1.1)
A 		3.6
(-2.6)
A 		16.5
(3)
A 		2.8
(-3)
A 		9
(-0.3)
A 		3.3
(-2.8)
A 		14
B 4.8
(-2.5)
A 		8.2
(-1.6)
A 		23.6
(2.4)
A 		2.7
(-3)
A 		25.8
(3)
A 		2.9
(-2.9)
A 		23
C 5.3
(-2.1)
A 		25.6
(3)
A 		2.4
(-2.8)
A 		5.1
(-2.2)
A 		1.8
(-3)
A 		20.2
(1.6)
A 		24
avr 5.7
(-1.8) 		12.5
(2) 		14.2
(3) 		3.5
(-3) 		12.2
(1.9) 		8.8
(-0) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15833
Sequence Type Exemplar sequence
Representative Public ID F15E11.3 NCBI
Target Description F15E11.3 /REP_DB=WormBase Gene ID /WP=CE17001 /TR=O44601 /GB=AAB94200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071243 NCBI Caenorhabditis elegans F15E11.3 (F15E11.3) mRNA, complete cds. 11/11 None
F15E11.3 ENSEMBL cdna:known chromosome:CEL140:V:2336379:2338466:-1 gene:F15E11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041498 3/11 Cross Hyb Matching Probes None
GENEFINDER00000041511 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2336378-2338466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E11.3
Entrez Gene 184538 Entrez gene
SwissProt O44601 EMBL-EBI
WormBase CE17001 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503644 F15E11.3 [Caenorhabditis elegans] gb|AAB94200.1| Hypothetical protein F15E11.3 [Caenorhabditis elegans] 1.0E-178
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 9.0E-86
blast AAK68424 Hypothetical protein Y19D10B.5 [Caenorhabditis elegans] ref|NP_503635.1| Y19D10B.5 [Caenorhabditis elegans] 4.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:184485_AT
aagttggtattcggatcgcaccttccagttcaaatttctgcatttcaacagaagaaatgt
tgaatttaattgaaaatgagaaatcgttaatccaagaaattgatgcaaaatactgcagcc
cgccgagtcctgtaccacatggaaagtggtgtaattcaacagtcaccactttgttaataa
aggaaggatgtactcaaatatttggaaatttggtaatagatcctgaaaatgagcatcttg
tgagccaactgaagatggtggaagtgatattcggaggattaattatcagaggcacaaatt
tgacgaaaatcgatttttttggcagtctcaaatatatttgggttttagataaaaccacat
cagctattcttgttgagaacaacccgaatttgattgcaaaatccaaggcactaccgatta
tcgtgttcgagaacaacaataacgcattggcctccgattccaagtactgctaccgatttc
aaaatgttgtgaatgttacaggccataggcagatgttttttgatgggaaaagttgtgata
aacttccgtcaaaatctgaaaaatgttctgcacttagtctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGGTATTCGGATCGCACCTTC 349 155 344 Antisense
TCGCACCTTCCAGTTCAAATTTCTG 274 599 359 Antisense
TGATGCAAAATACTGCAGCCCGCCG 177 567 444 Antisense
GCCGAGTCCTGTACCACATGGAAAG 243 285 465 Antisense
GTAATTCAACAGTCACCACTTTGTT 581 461 494 Antisense
ATGAGCATCTTGTGAGCCAACTGAA 423 45 572 Antisense
AACCACATCAGCTATTCTTGTTGAG 559 147 696 Antisense
GGCACTACCGATTATCGTGTTCGAG 83 535 750 Antisense
AACAATAACGCATTGGCCTCCGATT 573 133 778 Antisense
GATTCCAAGTACTGCTACCGATTTC 136 433 799 Antisense
GAAAAATGTTCTGCACTTAGTCTTA 141 355 901 Antisense
Sequence Source Affymetrix Proprietary Database