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[184484_s_at]

Description Y106G6A.3 /REP_DB=WormBase Gene ID /WP=CE19296 /TR=Q9XWQ3 /GB=CAA21596.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 64      6grp_total > 85      4grp_total > 46      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 853.4
(3)
P 		548
(-3)
P 		580.1
(-2.4)
P 		571.4
(-2.5)
P 		305
B 849.6
(3)
P 		757
(1.2)
P 		547.3
(-3)
P 		692.3
(-0.1)
P 		302
C 822.9
(3)
P 		692.8
(0.2)
P 		551
(-2.8)
P 		539.4
(-3)
P 		284
avr 842
(3) 		665.9
(-0.7) 		559.5
(-3) 		601
(-2.1) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 705.4
(-3)
P 		713.4
(-2.8)
P 		790.3
(-1.2)
P 		988.6
(3)
P 		862.6
(0.3)
P 		978.4
(2.8)
P 		283
B 802
(-3)
P 		808.6
(-2.8)
P 		846.4
(-1.7)
P 		821.6
(-2.4)
P 		1008.1
(3)
P 		923
(0.5)
P 		206
C 705.7
(-3)
P 		827.6
(-1.3)
P 		804.9
(-1.6)
P 		1141.3
(3)
P 		803.6
(-1.7)
P 		1025.6
(1.4)
P 		436
avr 737.7
(-3) 		783.2
(-1.9) 		813.9
(-1.1) 		983.8
(3) 		891.4
(0.7) 		975.7
(2.8) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 310.7
(3)
P 		119
(-2.1)
P 		151.7
(-1.2)
P 		83.6
(-3)
P 		227
B 270.9
(3)
P 		187
(-0.5)
P 		126.8
(-3)
P 		147.5
(-2.1)
P 		144
C 272.4
(3)
P 		199.2
(0.6)
P 		192.1
(0.3)
P 		91
(-3)
P 		181
avr 284.7
(3) 		168.4
(-0.9) 		156.9
(-1.3) 		107.4
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 130
(-3)
P 		253.7
(2.7)
P 		172.1
(-1.1)
P 		250.7
(2.6)
P 		260.3
(3)
P 		238.2
(2)
P 		130
B 279
(-0.8)
P 		269.2
(-1.1)
P 		205.5
(-3)
P 		217.6
(-2.6)
P 		409.6
(3)
P 		344.2
(1.1)
P 		204
C 261.6
(-0.5)
P 		252.5
(-0.9)
P 		204.8
(-3)
P 		229.5
(-1.9)
P 		260
(-0.6)
P 		343.3
(3)
P 		139
avr 223.5
(-1.5) 		258.5
(0.3) 		194.1
(-3) 		232.6
(-1) 		310
(3) 		308.6
(2.9) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184484_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2207
Sequence Type Exemplar sequence
Representative Public ID Y106G6A.3 NCBI
Target Description Y106G6A.3 /REP_DB=WormBase Gene ID /WP=CE19296 /TR=Q9XWQ3 /GB=CAA21596.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002352(10), NM_170914(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002352 NCBI Caenorhabditis elegans Y106G6A.2, miscRNA. 10/11 None
NM_170914 NCBI Caenorhabditis elegans Y106G6A.2a (Y106G6A.2) mRNA, complete cds. 10/11 A 
SNAP00000021906 ENSEMBL cdna:SNAP chromosome:CEL140:I:9940116:9942155:-1 10/11 None
GENEFINDER00000021912 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9940116:9942106:-1 10/11 None
Y106G6A.2a ENSEMBL cdna:known chromosome:CEL140:I:9939998:9942411:-1 gene:Y106G6A.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9940046-9940632(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y106G6A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21595 Hypothetical protein Y106G6A.2a [Caenorhabditis elegans] ref|NP_740908.1| Y106G6A.2a [Caenorhabditis elegans] 0.0
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 0.0
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 1.0E-180
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 1.0E-158
blast T26407 hypothetical protein Y106G6A.3 - Caenorhabditis elegans 1.0E-91
Sequence
Target Sequence 
>C. ELEGANS:184484_S_AT
cagattcgaaactcctacatcaatgataaactacgagcaaagctagcaaatcaactatca
aatggaacaataagtcttccattggatctacatccaccatttgctgccttcaccaataca
cttcaactcgttcatttattgagtgtgattttcaatttccgaccaccagaaacactttct
catcatgatttgtgtattcgtgaacggtggacaaaagaatcattgaatcgagattggtcg
actctttgtgatgcagttatctatttgtgtatatttattggaatgtcacatacaaaattg
aagtacactgatccacatcataatcttattgccctcgcgtctttcgttgttaacgattat
aacaacattaatcgaattgggagtcgtccaatgtgtgatctttcggaagttcatgccctt
attgaagctcaacgtccagaggattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATTCGAAACTCCTACATCAATG 6 207 61 Antisense
GTCTTCCATTGGATCTACATCCACC 274 469 134 Antisense
CTTCACCAATACACTTCAACTCGTT 297 217 168 Antisense
GTGATTTTCAATTTCCGACCACCAG 465 483 205 Antisense
CGACCACCAGAAACACTTTCTCATC 492 251 220 Antisense
GATTGGTCGACTCTTTGTGATGCAG 627 435 292 Antisense
CACATCATAATCTTATTGCCCTCGC 680 195 374 Antisense
CCTCGCGTCTTTCGTTGTTAACGAT 466 267 393 Antisense
GTGATCTTTCGGAAGTTCATGCCCT 618 483 455 Antisense
GTTCATGCCCTTATTGAAGCTCAAC 473 443 469 Antisense
GAAGCTCAACGTCCAGAGGATTGTC 2 343 484 Antisense
Sequence Source Affymetrix Proprietary Database