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[184483_at]

Description Y60A3A.19 /REP_DB=WormBase Gene ID /WP=CE26225 /TR=Q9U1Y8 /GB=CAB60403.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 65      6grp_total > 82      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 978.4
(-0.1)
P 		1238.1
(1.8)
P 		1398.6
(3)
P 		587
(-3)
P 		812
B 1024.2
(0.8)
P 		1215
(2.5)
P 		1265.4
(3)
P 		597.3
(-3)
P 		668
C 803.3
(-2)
P 		1127.9
(2.7)
P 		1146.4
(3)
P 		732.6
(-3)
P 		414
avr 935.3
(-0.2) 		1193.7
(2.3) 		1270.1
(3) 		639
(-3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 1323.8
(1.3)
P 		999.6
(-2.2)
P 		1489.5
(3)
P 		1346.1
(1.5)
P 		1209.1
(0)
P 		920.1
(-3)
P 		569
B 1048.2
(-1.6)
P 		1239.6
(0.2)
P 		898.8
(-3)
P 		1288.6
(0.6)
P 		1540
(3)
P 		1056.1
(-1.5)
P 		641
C 1083.9
(-3)
P 		1143.3
(-0.9)
P 		1156.1
(-0.5)
P 		1253.9
(3)
P 		1183
(0.5)
P 		1156.7
(-0.4)
P 		170
avr 1152
(-0.6) 		1127.5
(-1.1) 		1181.5
(0.1) 		1296.2
(2.7) 		1310.7
(3) 		1044.3
(-3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 356.2
(2.8)
P 		268.7
(0.9)
P 		365.6
(3)
P 		85.9
(-3)
P 		280
B 326.6
(3)
P 		300.1
(2.2)
P 		293.2
(2)
P 		127.3
(-3)
P 		199
C 265.9
(0.1)
P 		324.3
(1.4)
P 		399.6
(3)
P 		123.5
(-3)
P 		276
avr 316.2
(2.1) 		297.7
(1.6) 		352.8
(3) 		112.2
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 244
(-2.1)
P 		355.5
(2.6)
P 		324.4
(1.3)
P 		341.4
(2)
P 		364.9
(3)
P 		224
(-3)
P 		141
B 364.7
(-0.8)
P 		412.6
(-0.1)
P 		218.3
(-3)
P 		341.3
(-1.2)
P 		625.7
(3)
P 		393.8
(-0.4)
P 		407
C 401.7
(3)
P 		348.9
(0.9)
P 		294.2
(-1.3)
P 		252.2
(-3)
P 		382.8
(2.2)
P 		387.2
(2.4)
P 		150
avr 336.8
(-1.1) 		372.3
(0.1) 		279
(-3) 		311.6
(-1.9) 		457.8
(3) 		335
(-1.1) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13293
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.19 NCBI
Target Description Y60A3A.19 /REP_DB=WormBase Gene ID /WP=CE26225 /TR=Q9U1Y8 /GB=CAB60403.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075454(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075454 NCBI Caenorhabditis elegans Y60A3A.19 (Y60A3A.19) mRNA, complete cds. 9/11 None
GENEFINDER00000032836 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19914566:19918701:1 10/11 None
Y60A3A.19 ENSEMBL cdna:known chromosome:CEL140:V:19914566:19917929:1 gene:Y60A3A.19 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075654 2/11 Cross Hyb Matching Probes None
SNAP00000032796 3/11 Cross Hyb Matching Probes None
SNAP00000032586 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032588 2/11 Cross Hyb Matching Probes None
T08D2.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19914565-19917918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A3A.19
Entrez Gene 180305 Entrez gene
SwissProt Q9U1Y8 EMBL-EBI
WormBase CE38458 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604628_AT similar to Yip1 domain family, member 4 cfa
CANINE_2:CFA.1460.1.S1_AT similar to Yip1 domain family, member 4 cfa
CANINE_2:CFA.1460.2.S1_A_AT similar to Yip1 domain family, member 4 cfa
CANINE_2:CFAAFFX.9588.1.S1_S_AT similar to Yip1 domain family, member 4 cfa
CHICKEN:GGAAFFX.12600.1.S1_AT Yip1 domain family, member 4 gga
CHICKEN:GGAAFFX.6666.1.S1_S_AT Yip1 domain family, member 4 gga
HG-U133_PLUS_2:209551_AT Yip1 domain family, member 4 hs
HG-U133A_2:209551_AT Yip1 domain family, member 4 hs
HG-U133A:209551_AT Yip1 domain family, member 4 hs
HU35KSUBA:W28275_AT Yip1 domain family, member 4 hs
HU35KSUBB:RC_T51514_AT Yip1 domain family, member 4 hs
HU35KSUBD:RC_AA287059_AT Yip1 domain family, member 4 hs
U133_X3P:G13436109_3P_AT Yip1 domain family, member 4 hs
HG-U95AV2:41843_R_AT Yip1 domain family, member 4 hs
HG-U133A_2:213999_AT Yip1 domain family, member 4 hs
HG-U133_PLUS_2:213999_AT Yip1 domain family, member 4 hs
HG-U133A:213999_AT Yip1 domain family, member 4 hs
HG-U95AV2:41844_AT Yip1 domain family, member 4 hs
HG-U95B:48362_AT Yip1 domain family, member 4 hs
HG-U95E:77721_AT Yip1 domain family, member 4 hs
HG-U95E:79465_R_AT Yip1 domain family, member 4 hs
HG-U95D:86105_R_AT Yip1 domain family, member 4 hs
HU35KSUBA:N24988_AT Yip1 domain family, member 4 hs
HU35KSUBC:RC_N75944_AT Yip1 domain family, member 4 hs
U133_X3P:HS.66309.1.A1_3P_AT Yip1 domain family, member 4 hs
MOUSE430A_2:1450418_A_AT Yip1 domain family, member 4 mm
MOE430A:1450418_A_AT Yip1 domain family, member 4 mm
MOUSE430_2:1450418_A_AT Yip1 domain family, member 4 mm
MG-U74AV2:160475_AT Yip1 domain family, member 4 mm
MOE430A:1426417_AT Yip1 domain family, member 4 mm
MOUSE430A_2:1426417_AT Yip1 domain family, member 4 mm
MOUSE430_2:1426417_AT Yip1 domain family, member 4 mm
MOE430A:1426416_A_AT Yip1 domain family, member 4 mm
MOUSE430A_2:1426416_A_AT Yip1 domain family, member 4 mm
MOUSE430_2:1426416_A_AT Yip1 domain family, member 4 mm
MU19KSUBA:TC20158_AT Yip1 domain family, member 4, mRNA (cDNA clone MGC:7327 IMAGE:3486503) mm
MU19KSUBC:TC37460_AT Yip1 domain family, member 4, mRNA (cDNA clone MGC:7327 IMAGE:3486503) mm
RG-U34C:RC_AI137232_AT similar to RIKEN cDNA 2310034L04 (predicted) rn
RAE230A:1376727_AT similar to RIKEN cDNA 2310034L04 (predicted) rn
RAT230_2:1376727_AT similar to RIKEN cDNA 2310034L04 (predicted) rn
RAE230B:1394414_AT similar to RIKEN cDNA 2310034L04 (predicted) rn
RAT230_2:1394414_AT similar to RIKEN cDNA 2310034L04 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAE73129 Hypothetical protein CBG20513 [Caenorhabditis briggsae] 1.0E-107
blast CAB60403 Hypothetical protein Y60A3A.19 [Caenorhabditis elegans] ref|NP_507855.2| Y60A3A.19 [Caenorhabditis elegans] 1.0E-102
blast CAE73129 Hypothetical protein CBG20513 [Caenorhabditis briggsae] 1.0E-101
blast CAB60403 Hypothetical protein Y60A3A.19 [Caenorhabditis elegans] ref|NP_507855.2| Y60A3A.19 [Caenorhabditis elegans] 1.0E-97
blast CAB60403 Hypothetical protein Y60A3A.19 [Caenorhabditis elegans] ref|NP_507855.2| Y60A3A.19 [Caenorhabditis elegans] 1.0E-90
blast CAE73129 Hypothetical protein CBG20513 [Caenorhabditis briggsae] 6.0E-87
blast XP_793475 PREDICTED: similar to putative protein, with at least 3 transmembrane domains, of fungal and metazoan origin (28.2 kD) (5U389) [Strongylocentrotus purpuratus] 1.0E-46
blast XP_793475 PREDICTED: similar to putative protein, with at least 3 transmembrane domains, of fungal and metazoan origin (28.2 kD) (5U389) [Strongylocentrotus purpuratus] 6.0E-42
blast XP_793475 PREDICTED: similar to putative protein, with at least 3 transmembrane domains, of fungal and metazoan origin (28.2 kD) (5U389) [Strongylocentrotus purpuratus] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 1.9E-54
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 3.9E-8
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 4.4E-28
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 4.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507855.2 4 119-138,153-175,177-199,209-226
Y60A3A.19 5 126-148,152-171,178-200,205-227,236-253
GENEFINDER00000032836 4 166-183,188-210,220-242,263-285
Sequence
Target Sequence 
>C. ELEGANS:184483_AT
ttcagctcaggcttatcgtcgtactaatgctggagccgctggaaaatttatggagaatag
tggatttgggtggcttctggaggtcaatgaggaggacagtgaccagattccactgctcga
agaactggacattgacctaaccgatatttactacaaaatccgttgtgtgctccttccgct
gccatatttccgaatgaagctcaatattgtacgagaatcgcccgatttctggggcccact
ggctgtggtgctggcttttgcgattttatcgctttatggacaatttggggtagtctcgtg
gatcatcacaatttggttctgcggtggttttatggtatatttcattgctcgagctctcgg
cggtgacgttggttattcacaagtactcggaattgttggatattgcctgattccgctagt
tgtcacaagtcttatcactccgttgtttagcagtttccgcctcctctccaacggtctcgg
aatgttcggaaccatctggtcagtgtacagtgctggaactcttctctgtgtcgatgagct
tcaagccaagaagccacttgtcgtttatcccgttttcctgttgtatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCTCAGGCTTATCGTCGTACT 80 687 162 Antisense
TCGTCGTACTAATGCTGGAGCCGCT 312 603 177 Antisense
TTCCGCTGCCATATTTCCGAATGAA 134 699 335 Antisense
GTGGTGCTGGCTTTTGCGATTTTAT 308 489 406 Antisense
TTGGGGTAGTCTCGTGGATCATCAC 661 689 446 Antisense
GGTATATTTCATTGCTCGAGCTCTC 497 505 495 Antisense
GATATTGCCTGATTCCGCTAGTTGT 4 427 560 Antisense
GTCTTATCACTCCGTTGTTTAGCAG 44 469 590 Antisense
TCCTCTCCAACGGTCTCGGAATGTT 94 593 623 Antisense
GGAACTCTTCTCTGTGTCGATGAGC 479 529 676 Antisense
TTATCCCGTTTTCCTGTTGTATATC 292 679 726 Antisense
Sequence Source Affymetrix Proprietary Database