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[184482_at]

Description K04F10.2 /REP_DB=WormBase Gene ID /WP=CE11724 /TR=O44770 /GB=AAB96751.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 55.5
(-2.3)
A 		65.1
(-1.8)
A 		41.8
(-3)
A 		156.3
(3)
P 		115
B 87.7
(3)
A 		71.6
(1.6)
A 		19
(-3)
A 		86.7
(2.9)
A 		69
C 104.8
(-0.4)
A 		106.1
(-0.4)
A 		67.6
(-3)
M 		155
(3)
P 		87
avr 82.7
(-0.3) 		80.9
(-0.5) 		42.8
(-3) 		132.7
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 70.7
(3)
A 		47.9
(-0.9)
A 		61.3
(1.4)
A 		50.1
(-0.6)
A 		35.9
(-3)
A 		44.6
(-1.5)
A 		35
B 65.6
(1.1)
A 		52.9
(-1.7)
A 		74.3
(3)
A 		66.1
(1.2)
A 		47.2
(-3)
A 		58
(-0.6)
A 		27
C 71.7
(0.3)
A 		98.2
(3)
A 		60.7
(-0.8)
A 		74.2
(0.6)
A 		56.4
(-1.2)
A 		39
(-3)
A 		59
avr 69.3
(3) 		66.3
(2.2) 		65.4
(2) 		63.5
(1.5) 		46.5
(-3) 		47.2
(-2.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 20.2
(1.7)
A 		14.1
(-1.4)
A 		10.9
(-3)
A 		22.9
(3)
P 		12
B 28
(3)
A 		17.7
(0.4)
A 		4.4
(-3)
A 		18.5
(0.6)
A 		24
C 34.7
(3)
A 		30.5
(0.7)
A 		23.6
(-3)
M 		26.1
(-1.6)
P 		11
avr 27.6
(3) 		20.8
(0.2) 		13
(-3) 		22.5
(0.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13
(-0.9)
A 		17
(3)
A 		13.4
(-0.5)
A 		12.7
(-1.2)
A 		10.8
(-3)
A 		10.9
(-2.9)
A 		6
B 22.8
(3)
A 		17.6
(-2.9)
A 		18
(-2.4)
A 		17.5
(-3)
A 		19.2
(-1.1)
A 		21.6
(1.6)
A 		5
C 26.6
(1.8)
A 		30
(3)
A 		15.4
(-2.2)
A 		14.9
(-2.4)
A 		18.3
(-1.2)
A 		13.1
(-3)
A 		17
avr 20.8
(2.4) 		21.5
(3) 		15.6
(-2.4) 		15
(-3) 		16.1
(-2) 		15.2
(-2.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2192
Sequence Type Exemplar sequence
Representative Public ID K04F10.2 NCBI
Target Description K04F10.2 /REP_DB=WormBase Gene ID /WP=CE11724 /TR=O44770 /GB=AAB96751.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059435 NCBI Caenorhabditis elegans K04F10.2 (K04F10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027830 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6368979:6372195:1 11/11 None
K04F10.2 ENSEMBL cdna:known chromosome:CEL140:I:6368979:6372195:1 gene:K04F10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027823 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6368907-6372124(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F10.2
Entrez Gene 187003 Entrez gene
SwissProt O44770 EMBL-EBI
WormBase CE34333 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597581_AT similar to K04F10.2 cfa
CANINE_2:CFAAFFX.26613.1.S1_S_AT similar to K04F10.2 cfa
CANINE_2:CFAAFFX.26621.1.S1_S_AT similar to K04F10.2 cfa
CANINE_2:CFAAFFX.26623.1.S1_S_AT similar to K04F10.2 cfa
CANINE_2:CFAAFFX.26624.1.S1_S_AT similar to K04F10.2 cfa
HG-U133_PLUS_2:213185_AT KIAA0556 protein hs
HG-U133A_2:213185_AT KIAA0556 protein hs
HG-U133A:213185_AT KIAA0556 protein hs
HU35KSUBA:RC_AA400766_AT KIAA0556 protein hs
U133_X3P:HS.30512.0.S1_3P_AT KIAA0556 protein hs
HG-U95AV2:36279_AT KIAA0556 protein hs
HG-U95E:78718_AT KIAA0556 protein hs
U133_X3P:HS2.375495.1.S1_3P_S_AT KIAA0556 protein hs
HG-U133_PLUS_2:1569620_S_AT KIAA0556 protein hs
U133_X3P:HS.300817.0.A1_3P_AT KIAA0556 protein hs
MOUSE430_2:1435366_AT RIKEN cDNA D430042O09 gene mm
MOE430B:1435366_AT RIKEN cDNA D430042O09 gene mm
MG-U74CV2:166670_AT RIKEN cDNA D430042O09 gene mm
MOE430B:1443334_AT RIKEN cDNA D430042O09 gene mm
MOUSE430_2:1443334_AT RIKEN cDNA D430042O09 gene mm
RAE230A:1390338_AT similar to KIAA0556 protein rn
RAT230_2:1390338_AT similar to KIAA0556 protein rn
Protein Similarities
Method ID Description E-Value
blast AAB96751 Hypothetical protein K04F10.2 [Caenorhabditis elegans] ref|NP_491836.2| K04F10.2 [Caenorhabditis elegans] 0.0
blast CAE67171 Hypothetical protein CBG12601 [Caenorhabditis briggsae] 0.0
blast CAG04389 unnamed protein product [Tetraodon nigroviridis] 5.0E-82
Sequence
Target Sequence 
>C. ELEGANS:184482_AT
aagctactggattcgtatactttgattatgtgcaagatgtggttcttgacccaaataaca
ctgaaagagattttgtgccaaagggaataagtcaaagtattggtggattcgtatttcaaa
ttcgtcttttatctacatggggtgatgagttctacattggactcaatggaattgaacttt
ataatcggaaaggagaactcatgaaaattagagaacataacttggcagcatttccagaaa
gtgtaaacattcttccaaatataaaaaatgatttgcgtacttcaaataacctaatcacac
aacctaatgatactgacatagcaagaaatatgtggctgacagctcttcttccgaatagat
gtgctcgagtcttttttgtgtttgatgttcagacatatatctcaaaaattgtaatctaca
attatcgcaaaacccctgaacgcggggttcgacatatttcagtaactgtggatgatttga
taatcttctctggtgaaattccatcaagcacggccactttaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTACTGGATTCGTATACTTTGA 709 149 995 Antisense
GTGGTTCTTGACCCAAATAACACTG 235 485 1033 Antisense
AATTCGTCTTTTATCTACATGGGGT 701 169 1113 Antisense
GAGAACATAACTTGGCAGCATTTCC 223 393 1205 Antisense
GCGTACTTCAAATAACCTAATCACA 575 287 1269 Antisense
GACAGCTCTTCTTCCGAATAGATGT 93 369 1332 Antisense
GATGTGCTCGAGTCTTTTTTGTGTT 476 409 1352 Antisense
CAATTATCGCAAAACCCCTGAACGC 105 179 1413 Antisense
ACGCGGGGTTCGACATATTTCAGTA 234 91 1434 Antisense
AATCTTCTCTGGTGAAATTCCATCA 186 171 1476 Antisense
CCATCAAGCACGGCCACTTTAACTG 318 271 1495 Antisense
Sequence Source Affymetrix Proprietary Database