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[184481_at]

Description F46F11.1 /REP_DB=WormBase Gene ID /WP=CE26919 /TR=P91309 /GB=AAK21388.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 51      6grp_total > 26      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 569
1 2 3 4 range
A 827.7
(3)
P 		337
(-2.4)
P 		283.3
(-3)
P 		321.4
(-2.6)
P 		544
B 661.7
(3)
P 		335.1
(-1.9)
P 		258.3
(-3)
P 		451.6
(-0.1)
P 		403
C 796.9
(3)
P 		375.2
(-2.4)
P 		407.4
(-2)
P 		326.9
(-3)
P 		470
avr 762.1
(3) 		349.1
(-2.6) 		316.3
(-3) 		366.6
(-2.3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 764.6
(3)
P 		637
(1)
P 		478.3
(-1.5)
P 		407.9
(-2.6)
P 		461.3
(-1.8)
P 		382.1
(-3)
P 		383
B 856.5
(3)
P 		667.9
(0.7)
P 		576.5
(-0.4)
P 		676.7
(0.8)
P 		367.2
(-3)
P 		577.5
(-0.4)
P 		489
C 598.4
(-0.2)
P 		768.3
(3)
P 		484.7
(-2.3)
P 		586.7
(-0.4)
P 		446.8
(-3)
P 		635.7
(0.5)
P 		322
avr 739.8
(3) 		691.1
(2.1) 		513.2
(-1.3) 		557.1
(-0.5) 		425.1
(-3) 		531.8
(-1) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 301.4
(3)
P 		73.1
(-2.4)
P 		74.1
(-2.4)
P 		47
(-3)
P 		254
B 211
(3)
P 		82.8
(-2.1)
P 		59.9
(-3)
P 		96.2
(-1.6)
P 		151
C 263.8
(3)
P 		107.9
(-1.5)
P 		142
(-0.5)
P 		55.1
(-3)
P 		209
avr 258.7
(3) 		87.9
(-2.3) 		92
(-2.2) 		66.1
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 141
(-0.8)
P 		226.6
(3)
P 		104.2
(-2.5)
P 		103.5
(-2.5)
P 		139.2
(-0.9)
P 		93
(-3)
P 		134
B 298
(3)
P 		222.3
(0.1)
P 		140
(-3)
P 		179.2
(-1.5)
P 		149.2
(-2.7)
P 		215.4
(-0.1)
P 		158
C 221.8
(2.4)
P 		234.4
(3)
P 		123.4
(-2.7)
P 		118
(-3)
P 		144.6
(-1.6)
P 		212.8
(1.9)
P 		116
avr 220.3
(2.6) 		227.8
(3) 		122.5
(-3) 		133.6
(-2.4) 		144.3
(-1.8) 		173.7
(-0.1) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.989
Sequence Type Exemplar sequence
Representative Public ID F46F11.1 NCBI
Target Description F46F11.1 /REP_DB=WormBase Gene ID /WP=CE26919 /TR=P91309 /GB=AAK21388.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171837(9), NM_170868(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171837 NCBI Caenorhabditis elegans F46F11.1b (F46F11.1) mRNA, complete cds. 9/11 None
NM_170868 NCBI Caenorhabditis elegans F46F11.1a (F46F11.1) mRNA, complete cds. 10/11 None
F46F11.1b ENSEMBL cdna:known chromosome:CEL140:I:5627822:5637620:1 gene:F46F11.1 9/11 None
F46F11.1a ENSEMBL cdna:known chromosome:CEL140:I:5627829:5637499:1 gene:F46F11.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027809 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5627828-5637499(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46F11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15573 Hypothetical protein F46F11.1b [Caenorhabditis elegans] ref|NP_740856.1| F46F11.1b [Caenorhabditis elegans] 0.0
blast T25770 hypothetical protein F46F11.1 - Caenorhabditis elegans 0.0
blast AAK21388 Hypothetical protein F46F11.1a [Caenorhabditis elegans] ref|NP_740855.1| F46F11.1a [Caenorhabditis elegans] 0.0
blast CAE68917 Hypothetical protein CBG14896 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184481_AT
gccagcgatataatttttcaccacaaaaaattatttgtttttcttttgcatgctcgtcga
tacttcccgtatagattcaaacatcacacggctcaactgctaacaggaatgagcggagga
ggtgttcatatgcaaaatcgattgatcagcactgatgtattgactggaaaatttggagat
catgataataaaaaaaattcgagaaaagatttcggagctggaactgcagttctttcaaca
gcagttattgcacgatcatcttcagctccacgtctcatgacttatgagtctgaagatttt
tctgttggagaaatcaaaagattctggccaccacttcgttcgcttgaaactcttcacgat
tctatcaatttatctcaatttgatggatttttggagcgacttatcaaaggagcattgact
cctttaccatctccaccaaaaactccacttccatctgcactttcttgtgatgcgatcaat
aaaactccgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGCGATATAATTTTTCACCACA 607 279 3139 Antisense
TGTTTTTCTTTTGCATGCTCGTCGA 324 561 3174 Antisense
CTCGTCGATACTTCCCGTATAGATT 242 231 3191 Antisense
TCACACGGCTCAACTGCTAACAGGA 157 629 3222 Antisense
GATTTCGGAGCTGGAACTGCAGTTC 676 427 3346 Antisense
GTTATTGCACGATCATCTTCAGCTC 645 447 3382 Antisense
CAGCTCCACGTCTCATGACTTATGA 542 203 3401 Antisense
GTTCGCTTGAAACTCTTCACGATTC 671 441 3476 Antisense
GGAGCATTGACTCCTTTACCATCTC 505 519 3547 Antisense
ACTTCCATCTGCACTTTCTTGTGAT 341 103 3585 Antisense
GATGCGATCAATAAAACTCCGACAC 162 415 3607 Antisense
Sequence Source Affymetrix Proprietary Database