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[184480_at]

Description C09G12.5 /REP_DB=WormBase Gene ID /WP=CE16839 /TR=O44457 /GB=AAC25816.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3
(-2.7)
A 		4
(-2.5)
A 		31.3
(3)
A 		1.6
(-3)
A 		30
B 6.4
(-2.3)
A 		41
(3)
A 		2.1
(-3)
A 		5.3
(-2.5)
A 		39
C 5.1
(-2)
A 		21.8
(3)
A 		1.6
(-3)
A 		16
(1.3)
A 		20
avr 4.8
(-3) 		22.3
(3) 		11.7
(-0.6) 		7.6
(-2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 22.3
(3)
A 		1.6
(-3)
A 		5.5
(-1.9)
A 		4.4
(-2.2)
A 		2.1
(-2.9)
A 		3
(-2.6)
A 		21
B 33.2
(0.6)
A 		3.4
(-2.8)
A 		21.6
(-0.7)
A 		54
(3)
A 		19.7
(-0.9)
A 		1.3
(-3)
A 		53
C 2
(-2.9)
A 		1.8
(-3)
A 		5.2
(-1.6)
A 		4
(-2.1)
A 		16
(3)
A 		2.1
(-2.9)
A 		14
avr 19.2
(2.5) 		2.3
(-2.9) 		10.8
(-0.2) 		20.8
(3) 		12.6
(0.4) 		2.1
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-2.3)
A 		0.9
(-2.5)
A 		8.2
(3)
A 		0.2
(-3)
A 		8
B 2
(-2.1)
A 		10.1
(3)
A 		0.5
(-3)
A 		1.1
(-2.6)
A 		10
C 1.7
(-1.8)
A 		6.3
(3)
A 		0.6
(-3)
A 		2.7
(-0.8)
A 		6
avr 1.6
(-2.6) 		5.8
(3) 		3.1
(-0.6) 		1.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.1
(3)
A 		0.6
(-3)
A 		1.2
(-2)
A 		1.1
(-2.1)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		4
B 11.6
(1.8)
A 		1.1
(-2.7)
A 		5.2
(-1)
A 		14.3
(3)
A 		8
(0.3)
A 		0.5
(-3)
A 		14
C 0.7
(-2.9)
A 		0.6
(-3)
A 		1.3
(-2.1)
A 		0.8
(-2.7)
A 		5.2
(3)
A 		0.7
(-2.9)
A 		5
avr 5.5
(3) 		0.8
(-2.8) 		2.6
(-0.6) 		5.4
(2.9) 		4.6
(1.9) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10761
Sequence Type Exemplar sequence
Representative Public ID C09G12.5 NCBI
Target Description C09G12.5 /REP_DB=WormBase Gene ID /WP=CE16839 /TR=O44457 /GB=AAC25816.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067955 NCBI Caenorhabditis elegans C09G12.5 (C09G12.5) mRNA, complete cds. 11/11 None
SNAP00000001976 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3479341:3481588:1 11/11 None
GENEFINDER00000001991 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3479341:3490181:1 11/11 None
C09G12.5 ENSEMBL cdna:known chromosome:CEL140:IV:3479341:3479710:1 gene:C09G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3479346-3479716(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G12.5
Entrez Gene 182471 Entrez gene
SwissProt O44457 EMBL-EBI
WormBase CE16839 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B88650 protein C09G12.4 [imported] - Caenorhabditis elegans 1.0E-176
blast AAT92088 Serpentine receptor, class z protein 82 [Caenorhabditis elegans] ref|NP_001021315.1| Serpentine Receptor, class Z family member (srz-82) [Caenorhabditis elegans] 7.0E-84
blast AAC25815 Serpentine receptor, class z protein 79 [Caenorhabditis elegans] ref|NP_500359.1| Serpentine Receptor, class Z family member (srz-79) [Caenorhabditis elegans] 3.0E-68
blast AAC25816 Hypothetical protein C09G12.5 [Caenorhabditis elegans] ref|NP_500356.1| C09G12.5 [Caenorhabditis elegans] 2.0E-46
blast AAC25816 Hypothetical protein C09G12.5 [Caenorhabditis elegans] ref|NP_500356.1| C09G12.5 [Caenorhabditis elegans] 2.0E-43
blast CAB05242 Hypothetical protein K03D3.5 [Caenorhabditis elegans] ref|NP_502941.1| K03D3.5 [Caenorhabditis elegans] 7.0E-43
blast CAB05242 Hypothetical protein K03D3.5 [Caenorhabditis elegans] ref|NP_502941.1| K03D3.5 [Caenorhabditis elegans] 7.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-10
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.5E-6
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.1E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001991 12 101-123,160-182,195-217,237-270,291-313,323-345,382-404,408-430,460-482,497-519,540-562,572-594
Sequence
Target Sequence 
>C. ELEGANS:184480_AT
tgttcaagcaacttttccttttctccgcttttcttctcgtattgctagatgcttccactc
cagcagtcccatcaagagaaagcgtagtagccggtcttgttgccaatgggctcaagaagg
acttggtggagaagattctcgagttgagagagaagtacaatacggagatcatcaaggcga
atgcatcgggcaatcaaaaactaatgcaggccacgtggaacaagcatcaggagttgtacc
ataagttgttcgcaaaggtgaccaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCAAGCAACTTTTCCTTTTCTC 424 561 14 Antisense
CGCTTTTCTTCTCGTATTGCTAGAT 501 255 39 Antisense
TCGTATTGCTAGATGCTTCCACTCC 611 603 50 Antisense
ACTCCAGCAGTCCCATCAAGAGAAA 361 99 70 Antisense
TTGCCAATGGGCTCAAGAAGGACTT 335 699 113 Antisense
GAAGGACTTGGTGGAGAAGATTCTC 122 335 129 Antisense
GAGAAGTACAATACGGAGATCATCA 689 391 163 Antisense
AAGGCGAATGCATCGGGCAATCAAA 219 161 187 Antisense
AAACTAATGCAGGCCACGTGGAACA 155 127 211 Antisense
GAGTTGTACCATAAGTTGTTCGCAA 228 397 244 Antisense
AGTTGTTCGCAAAGGTGACCAAGGA 608 61 257 Antisense
Sequence Source Affymetrix Proprietary Database