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[184479_s_at]

Description Y51H1A.3A /REP_DB=WormBase Gene ID /WP=CE20284 /TR=Q9XWJ6 /GB=CAA21667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 40      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 47      6grp_total > 42      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1678
1 2 3 4 range
A 3662.8
(-1.1)
P 		4130.7
(0.8)
P 		4665.1
(3)
P 		3188.7
(-3)
P 		1476
B 3440.4
(-0.6)
P 		3747.7
(1)
P 		4122.4
(3)
P 		2986.7
(-3)
P 		1136
C 3377.5
(0.1)
P 		3612.8
(2.2)
P 		3699.6
(3)
P 		3034.6
(-3)
P 		665
avr 3493.6
(-0.7) 		3830.4
(1.2) 		4162.4
(3) 		3070
(-3) 		1092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2098
1 2 3 4 5 6 range
A 3594.8
(0.6)
P 		3218
(-1)
P 		4180
(3)
P 		3376
(-0.4)
P 		2741.1
(-3)
P 		2957.2
(-2.1)
P 		1439
B 3283.8
(0.8)
P 		3233.3
(0.5)
P 		3644
(3)
P 		3541.3
(2.4)
P 		3064.2
(-0.6)
P 		2673.8
(-3)
P 		970
C 4031.8
(3)
P 		3136.5
(0.2)
P 		4023.2
(3)
P 		3605.5
(1.7)
P 		3271
(0.7)
P 		2081.8
(-3)
P 		1950
avr 3636.8
(1.6) 		3195.9
(-0.3) 		3949.1
(3) 		3507.6
(1.1) 		3025.4
(-1) 		2570.9
(-3) 		1378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 867
1 2 3 4 range
A 1333.6
(3)
P 		896.7
(-0)
P 		1219.6
(2.2)
P 		466.8
(-3)
P 		867
B 1097.1
(3)
P 		925.6
(0.8)
P 		955.3
(1.2)
P 		636.5
(-3)
P 		461
C 1118
(1.7)
P 		1038.7
(1.1)
P 		1289.4
(3)
P 		511.7
(-3)
P 		778
avr 1182.9
(3) 		953.7
(0.9) 		1154.8
(2.7) 		538.3
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 832
1 2 3 4 5 6 range
A 662.7
(-3)
P 		1144.5
(3)
P 		910.3
(0.1)
P 		856.2
(-0.6)
P 		827.1
(-1)
P 		720
(-2.3)
P 		482
B 1142.6
(1.3)
P 		1076.2
(0.2)
P 		884.9
(-3)
P 		938
(-2.1)
P 		1245
(3)
P 		997
(-1.1)
P 		360
C 1494.4
(3)
P 		957
(-1)
P 		1024
(-0.5)
P 		725.1
(-2.8)
P 		1058.5
(-0.3)
P 		696.9
(-3)
P 		798
avr 1099.9
(3) 		1059.2
(2.2) 		939.7
(-0.3) 		839.8
(-2.3) 		1043.5
(1.9) 		804.6
(-3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184479_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3111
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.3A NCBI
Target Description Y51H1A.3A /REP_DB=WormBase Gene ID /WP=CE20284 /TR=Q9XWJ6 /GB=CAA21667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064506(11), NM_064507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064506 NCBI Caenorhabditis elegans Y51H1A.3a (Y51H1A.3) mRNA, complete cds. 11/11 None
NM_064507 NCBI Caenorhabditis elegans Y51H1A.3b (Y51H1A.3) mRNA, complete cds. 11/11 None
SNAP00000044415 ENSEMBL cdna:SNAP chromosome:CEL140:II:13861018:13882158:1 11/11 None
GENEFINDER00000044420 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13872765:13875112:1 10/11 None
Y51H1A.3b ENSEMBL cdna:known chromosome:CEL140:II:13872761:13875112:1 gene:Y51H1A.3 11/11 None
Y51H1A.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:13872761:13875191:1 gene:Y51H1A.3 11/11 None
Y51H1A.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:13872763:13875191:1 gene:Y51H1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13872761-13875109(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H1A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21665 Hypothetical protein Y51H1A.4 [Caenorhabditis elegans] ref|NP_496909.1| Y51H1A.4 [Caenorhabditis elegans] 0.0
blast CAE73262 Hypothetical protein CBG20678 [Caenorhabditis briggsae] 1.0E-154
blast CAA21668 Hypothetical protein Y51H1A.3b [Caenorhabditis elegans] ref|NP_496908.1| Y51H1A.3b [Caenorhabditis elegans] 1.0E-130
blast CAA21667 Hypothetical protein Y51H1A.3a [Caenorhabditis elegans] ref|NP_496907.1| Y51H1A.3a [Caenorhabditis elegans] 1.0E-118
blast CAE73263 Hypothetical protein CBG20679 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 7.5E-16
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 1.0E-126
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 8.0E-88
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 3.2E-50
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 1.0E-126
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044420 2 151-170,175-197
Sequence
Target Sequence 
>C. ELEGANS:184479_S_AT
tacggcctcagaccagaagactatcaatcaatggacaaagacgacgtgatcaagttcgcc
ggagactatccagacctcggtgtaatcacctacgaccacaaggatccgtatgaggcgtgg
accgatcggcagaatcgccggaattggggagagctcgtgccgatcgatatgatgcgctat
cgaggcgatcgtctcacgtttacaggcctcgaggcggaagattacaccacctggaactcg
atcgttatgtgcctccgcgtgctcgtaccgatggctctcctcgcctggtactttaccaac
gaacatccgaacgcgctccgttggaagaatccggcaatgccgaagcagtattcatacgat
ttctaccgtgcctacccgttcgacgatccacgcaaataccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGGCCTCAGACCAGAAGACTATC 200 647 181 Antisense
GATCAAGTTCGCCGGAGACTATCCA 476 421 228 Antisense
GAGACTATCCAGACCTCGGTGTAAT 702 391 242 Antisense
GAGGCGTGGACCGATCGGCAGAATC 694 403 292 Antisense
GAATTGGGGAGAGCTCGTGCCGATC 2 323 321 Antisense
TATCGAGGCGATCGTCTCACGTTTA 319 653 358 Antisense
TCACGTTTACAGGCCTCGAGGCGGA 131 627 374 Antisense
GATTACACCACCTGGAACTCGATCG 493 429 400 Antisense
TCCTCGCCTGGTACTTTACCAACGA 602 593 458 Antisense
TTCATACGATTTCTACCGTGCCTAC 504 685 531 Antisense
CGTTCGACGATCCACGCAAATACCC 16 247 557 Antisense
Sequence Source Affymetrix Proprietary Database