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[184478_at]

Description Y71A12B.5 /REP_DB=WormBase Gene ID /WP=CE24586 /TR=Q9NEP2 /GB=CAB81990.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 112.2
(2)
P 		119.5
(3)
A 		111
(1.8)
P 		75.9
(-3)
A 		44
B 59.5
(-2.4)
A 		114.6
(3)
A 		65.8
(-1.8)
A 		53.6
(-3)
A 		61
C 102.8
(-2)
A 		141.9
(3)
A 		95.2
(-3)
A 		112.2
(-0.8)
P 		47
avr 91.5
(-1.5) 		125.3
(3) 		90.7
(-1.6) 		80.6
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 130.6
(3)
P 		82.9
(-1.5)
A 		87.8
(-1)
A 		71.3
(-2.6)
A 		66.9
(-3)
A 		98.3
(-0)
A 		64
B 127.7
(3)
A 		94.1
(-0)
P 		97.3
(0.3)
A 		69.9
(-2.2)
P 		86.4
(-0.7)
A 		60.9
(-3)
A 		67
C 81.6
(-1.1)
A 		88.5
(-0.5)
M 		129.5
(3)
A 		92.7
(-0.1)
A 		68.6
(-2.2)
A 		59.2
(-3)
A 		70
avr 113.3
(3) 		88.5
(-0.7) 		104.9
(1.8) 		78
(-2.2) 		74
(-2.8) 		72.8
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 40.9
(3)
P 		25.9
(-0)
A 		29
(0.6)
P 		11.1
(-3)
A 		30
B 19
(-0.3)
A 		28.3
(3)
A 		15.3
(-1.6)
A 		11.4
(-3)
A 		17
C 34
(1.1)
A 		40.8
(3)
A 		33.2
(0.9)
A 		18.9
(-3)
P 		22
avr 31.3
(2.9) 		31.7
(3) 		25.8
(1) 		13.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 24.1
(0.2)
P 		29.5
(3)
A 		19.1
(-2.5)
A 		18.1
(-3)
A 		20.2
(-1.9)
A 		23.9
(0.1)
A 		11
B 44.4
(3)
A 		31.3
(-0)
P 		23.6
(-1.8)
A 		18.5
(-3)
P 		35.1
(0.8)
A 		22.7
(-2)
A 		26
C 30.3
(1.9)
A 		27
(0.5)
M 		33
(3)
A 		18.6
(-3)
A 		22.2
(-1.5)
A 		19.8
(-2.5)
A 		14
avr 32.9
(3) 		29.3
(1.5) 		25.2
(-0.2) 		18.4
(-3) 		25.8
(0.1) 		22.1
(-1.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2181
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.5 NCBI
Target Description Y71A12B.5 /REP_DB=WormBase Gene ID /WP=CE24586 /TR=Q9NEP2 /GB=CAB81990.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061029 NCBI Caenorhabditis elegans Y71A12B.5 (Y71A12B.5) mRNA, complete cds. 11/11 None
GENEFINDER00000038406 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13923782:13925927:1 11/11 None
Y71A12B.5 ENSEMBL cdna:known chromosome:CEL140:I:13923782:13925927:1 gene:Y71A12B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038362 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13923712-13925858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.5
Entrez Gene 190575 Entrez gene
SwissProt Q9NEP2 EMBL-EBI
WormBase CE24586 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB81990 Hypothetical protein Y71A12B.5 [Caenorhabditis elegans] ref|NP_493430.1| Y71A12B.5 [Caenorhabditis elegans] 1.0E-172
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 2.0E-45
blast CAE56464 Hypothetical protein CBG24174 [Caenorhabditis briggsae] 5.0E-44
Sequence
Target Sequence 
>C. ELEGANS:184478_AT
tgtatcagcgacacttggaccttcacctcgggctctagtgtatcatgccaggcaaacttt
acaatgtttgtgagaccgcttgggtcgtggtgtattgggatcatccccaccaccacatgc
ctcacccagcaggacagtgctacccagtgcaagagcttatacggtggggtgctgagtggc
ctgcaaactttggcggaacgagattttgttgctgctaccgctcagccttggctcggtctt
cagagcaacttcaccacctacggtgtttggatcaatggggcccgtaagacttcttgtatg
gaaactgtgaaaagtgtagattgtaacgggacaaatgaattcgcctattctgacccctta
ctaaccgcctacgacgggtacacatgggccgctaatcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCAGCGACACTTGGACCTTCA 333 561 325 Antisense
TTCACCTCGGGCTCTAGTGTATCAT 16 687 346 Antisense
GTCGTGGTGTATTGGGATCATCCCC 24 473 408 Antisense
GACAGTGCTACCCAGTGCAAGAGCT 491 367 457 Antisense
GTGGCCTGCAAACTTTGGCGGAACG 315 491 500 Antisense
ACGAGATTTTGTTGCTGCTACCGCT 639 93 522 Antisense
GCCTTGGCTCGGTCTTCAGAGCAAC 648 281 549 Antisense
GCAACTTCACCACCTACGGTGTTTG 682 317 569 Antisense
AAATGAATTCGCCTATTCTGACCCC 536 119 657 Antisense
TAACCGCCTACGACGGGTACACATG 661 573 686 Antisense
GGTACACATGGGCCGCTAATCAACC 556 503 701 Antisense
Sequence Source Affymetrix Proprietary Database