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[184477_at]

Description Y59A8B.11 /REP_DB=WormBase Gene ID /WP=CE24504 /TR=Q9NEQ6 /GB=CAB60959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 13      6grp_total > 96      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 81.2
(-3)
P 		111.8
(-1.9)
P 		88.6
(-2.7)
P 		243.3
(3)
P 		162
B 54.7
(-3)
A 		60.5
(-2.9)
P 		59.4
(-2.9)
M 		352.1
(3)
P 		297
C 84.7
(-1.9)
P 		39.8
(-3)
A 		63.6
(-2.4)
P 		292.4
(3)
P 		253
avr 73.5
(-2.9) 		70.7
(-3) 		70.5
(-3) 		295.9
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 79.1
(-2.5)
P 		50.2
(-3)
M 		87.6
(-2.3)
P 		167.8
(-0.8)
P 		240
(0.5)
P 		375.7
(3)
P 		326
B 75.3
(-2.5)
P 		68.6
(-2.6)
A 		51.2
(-3)
P 		193.1
(-0.1)
P 		258.4
(1.3)
P 		343.7
(3)
P 		293
C 77.6
(-3)
P 		89.3
(-2.7)
P 		95
(-2.5)
P 		236.6
(1.4)
P 		220.9
(0.9)
P 		295.6
(3)
P 		218
avr 77.3
(-2.8) 		69.4
(-3) 		77.9
(-2.8) 		199.2
(-0.1) 		239.8
(0.8) 		338.3
(3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 29.6
(0.1)
P 		24.3
(-2.5)
P 		23.2
(-3)
P 		35.6
(3)
P 		12
B 17.4
(-2.6)
A 		14.9
(-2.9)
P 		13.8
(-3)
M 		75
(3)
P 		61
C 28
(-0.4)
P 		11.5
(-3)
A 		22.2
(-1.3)
P 		49.3
(3)
P 		38
avr 25
(-1.7) 		16.9
(-3) 		19.7
(-2.5) 		53.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 14.6
(-3)
P 		17.8
(-2.8)
M 		19.1
(-2.6)
P 		42.6
(-0.8)
P 		72.4
(1.5)
P 		91.5
(3)
P 		77
B 26.2
(-2.3)
P 		22.8
(-2.5)
A 		12.4
(-3)
P 		51.1
(-1)
P 		105
(1.8)
P 		128.2
(3)
P 		116
C 28.8
(-2.6)
P 		27.2
(-2.8)
P 		24.2
(-3)
P 		47.6
(-1.1)
P 		71.5
(0.8)
P 		99
(3)
P 		75
avr 23.2
(-2.7) 		22.6
(-2.7) 		18.6
(-3) 		47.1
(-1) 		83
(1.4) 		106.2
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13283
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.11 NCBI
Target Description Y59A8B.11 /REP_DB=WormBase Gene ID /WP=CE24504 /TR=Q9NEQ6 /GB=CAB60959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075129 NCBI Caenorhabditis elegans Y59A8B.11 (Y59A8B.11) mRNA, complete cds. 11/11 None
SNAP00000028706 ENSEMBL cdna:SNAP chromosome:CEL140:V:18085032:18085805:-1 11/11 None
GENEFINDER00000028715 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18085032:18086019:-1 11/11 None
Y59A8B.11 ENSEMBL cdna:known chromosome:CEL140:V:18085009:18086019:-1 gene:Y59A8B.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18085031-18086019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.11
Entrez Gene 190394 Entrez gene
SwissProt Q9NEQ6 EMBL-EBI
WormBase CE24504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60959 Hypothetical protein Y59A8B.11 [Caenorhabditis elegans] ref|NP_507530.1| Y59A8B.11 [Caenorhabditis elegans] 1.0E-171
blast CAB60959 Hypothetical protein Y59A8B.11 [Caenorhabditis elegans] ref|NP_507530.1| Y59A8B.11 [Caenorhabditis elegans] 1.0E-139
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 1.0E-61
blast CAB04531 Hypothetical protein F59A1.7 [Caenorhabditis elegans] ref|NP_507468.1| F59A1.7 [Caenorhabditis elegans] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.1E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.2E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.1E-50
Sequence
Target Sequence 
>C. ELEGANS:184477_AT
atcgacttttccattaatcttccaacttttgccgcaacaatttttccgcttcttcaacca
ggatttctagaagaaatttgcatttactgcagcgggaatccagattacgtcgatcaatta
tttgaaatggagcaatggaaaagagccaagtcgatttttattgattcatatggagagaag
catttcccaattgaaaatctcttccatcttacccacttcttcattgatacggcgtatctt
tctgtcgctgatgctgttaaaatcagagatattctcttgaaatcgactgtttttgagtct
ggaatcatcacttctagaaatatcttcagcgttggagttgtgcgagttttcaatccaaat
ttcattgctagaagaccttttcgcgttgactatgacaatggctctcacttcagcctctta
tacgatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACTTTTCCATTAATCTTCCAA 393 37 448 Antisense
ATTAATCTTCCAACTTTTGCCGCAA 497 3 460 Antisense
TTTTGCCGCAACAATTTTTCCGCTT 21 675 474 Antisense
TTTTCCGCTTCTTCAACCAGGATTT 109 673 489 Antisense
TTGAAAATCTCTTCCATCTTACCCA 233 705 638 Antisense
TCTTACCCACTTCTTCATTGATACG 261 615 654 Antisense
ATACGGCGTATCTTTCTGTCGCTGA 651 23 674 Antisense
GGAGTTGTGCGAGTTTTCAATCCAA 630 517 781 Antisense
GCTAGAAGACCTTTTCGCGTTGACT 159 303 814 Antisense
GACTATGACAATGGCTCTCACTTCA 439 373 835 Antisense
TCACTTCAGCCTCTTATACGATCAT 250 625 852 Antisense
Sequence Source Affymetrix Proprietary Database