[Home] | [Total List]

[184476_at]

Description C40A11.9 /REP_DB=WormBase Gene ID /WP=CE19372 /TR=Q9TZA3 /GB=AAC68764.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 27
(-2.4)
A 		44.4
(-0.7)
A 		20.9
(-3)
A 		81.3
(3)
A 		60
B 18.9
(-3)
A 		53.1
(3)
A 		49.3
(2.3)
A 		44.7
(1.5)
A 		34
C 39
(3)
A 		35.3
(2.1)
A 		18.3
(-1.9)
A 		13.7
(-3)
A 		25
avr 28.3
(-3) 		44.3
(2.2) 		29.5
(-2.6) 		46.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 39.8
(1.6)
A 		32.8
(0.7)
A 		50
(3)
A 		22.2
(-0.7)
A 		4.8
(-3)
A 		27
(-0.1)
A 		45
B 11.2
(-0.9)
A 		5.7
(-3)
A 		21.4
(3)
A 		8.8
(-1.8)
A 		9.7
(-1.5)
A 		12.8
(-0.3)
A 		16
C 43.7
(1.5)
A 		57.2
(3)
A 		54.5
(2.7)
A 		42.1
(1.3)
A 		7.7
(-2.4)
A 		2.6
(-3)
A 		55
avr 31.6
(1.2) 		31.9
(1.2) 		42
(3) 		24.4
(-0.1) 		7.4
(-3) 		14.1
(-1.8) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.8
(1)
A 		9.6
(0.8)
A 		5.5
(-3)
A 		11.9
(3)
A 		6
B 6
(-3)
A 		13.1
(3)
A 		11.4
(1.6)
A 		9.5
(-0)
A 		7
C 12.9
(3)
A 		10.1
(1.4)
A 		6.4
(-0.7)
A 		2.3
(-3)
A 		11
avr 9.6
(0.5) 		10.9
(3) 		7.8
(-3) 		7.9
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.3
(0.4)
A 		11.7
(3)
A 		10.9
(2.5)
A 		5.6
(-0.6)
A 		1.4
(-3)
A 		6.6
(0)
A 		10
B 3.9
(0.6)
A 		1.9
(-3)
A 		5.2
(3)
A 		2.3
(-2.3)
A 		4
(0.8)
A 		4.8
(2.3)
A 		3
C 16.2
(2.6)
A 		17.4
(3)
A 		13.9
(1.7)
A 		8.5
(-0.2)
A 		2.5
(-2.4)
A 		0.9
(-3)
A 		17
avr 9.1
(2.1) 		10.3
(3) 		10
(2.8) 		5.5
(-0.7) 		2.6
(-3) 		4.1
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4736
Sequence Type Exemplar sequence
Representative Public ID C40A11.9 NCBI
Target Description C40A11.9 /REP_DB=WormBase Gene ID /WP=CE19372 /TR=Q9TZA3 /GB=AAC68764.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061801 NCBI Caenorhabditis elegans C40A11.9 (C40A11.9) mRNA, complete cds. 11/11 None
C40A11.9 ENSEMBL cdna:known chromosome:CEL140:II:2155486:2157593:-1 gene:C40A11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005083 8/11 Cross Hyb Matching Probes None
SNAP00000042071 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C40A11.9
Entrez Gene 183357 Entrez gene
SwissProt Q9TZA3 EMBL-EBI
WormBase CE19372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68764 Hypothetical protein C40A11.9 [Caenorhabditis elegans] ref|NP_494202.1| C40A11.9 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 2.0E-98
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 3.0E-90
Sequence
Target Sequence 
>C. ELEGANS:184476_AT
gaacatttcgcagcactcatttcaagatcaaacccagcacaccagctggcggcgatgttt
gaaaagattgcgcaagacagtcggttccctttcatatacagagtttttgggacatggtta
ttactttggacacatctacgagccactgtgctcaatatgaaaacctcaacctccgcgaat
tgctctttatctggcttcaacggtgtagttactcaaatatattttgtattccaagcacat
cagaaagaaagagcctcttacccaatgctcatcttatcaaccgctggaatacaacccatt
gccagaaaccccgagcgagtgctcctccacgagtcagaccaagtaggcatagagtccacc
cgctttgaaagaactctaatccctgcatcggtactacttgatcgaggaacactactctca
aacgttcatcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATTTCGCAGCACTCATTTCAA 511 351 856 Antisense
ATTGCGCAAGACAGTCGGTTCCCTT 413 7 922 Antisense
GACACATCTACGAGCCACTGTGCTC 337 367 984 Antisense
CTCCGCGAATTGCTCTTTATCTGGC 652 233 1026 Antisense
AAAGAGCCTCTTACCCAATGCTCAT 199 123 1103 Antisense
CCAATGCTCATCTTATCAACCGCTG 487 277 1117 Antisense
ACCGCTGGAATACAACCCATTGCCA 582 89 1135 Antisense
CTCCTCCACGAGTCAGACCAAGTAG 206 235 1177 Antisense
AGAGTCCACCCGCTTTGAAAGAACT 486 43 1206 Antisense
TAATCCCTGCATCGGTACTACTTGA 685 635 1232 Antisense
ACACTACTCTCAAACGTTCATCGCT 677 109 1264 Antisense
Sequence Source Affymetrix Proprietary Database