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[184475_s_at]

Description H17B01.4 /REP_DB=WormBase Gene ID /WP=CE27186 /TR=O44825 /GB=AAK31541.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 75      6grp_total > 26      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1026
1 2 3 4 range
A 1311.4
(2.3)
P 		1412.9
(3)
P 		1274.7
(2.1)
P 		506.7
(-3)
P 		906
B 1265.7
(1.9)
P 		1437.3
(3)
P 		1405.6
(2.8)
P 		511
(-3)
P 		926
C 1186.8
(2)
P 		1335.4
(3)
P 		1335.1
(3)
P 		411.3
(-3)
P 		924
avr 1254.6
(2.1) 		1395.2
(3) 		1338.5
(2.6) 		476.3
(-3) 		919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 747.1
(-1.8)
P 		1016.9
(3)
P 		742
(-1.9)
P 		679.8
(-3)
P 		756.9
(-1.6)
P 		915.8
(1.2)
P 		337
B 1012.4
(3)
P 		917
(1.1)
P 		822.8
(-0.8)
P 		716.7
(-3)
P 		744.1
(-2.4)
P 		844
(-0.4)
P 		296
C 1048.9
(3)
P 		842
(0.4)
P 		785.7
(-0.3)
P 		573.4
(-3)
P 		833.4
(0.3)
P 		760.6
(-0.6)
P 		476
avr 936.1
(3) 		925.3
(2.8) 		783.5
(-0.3) 		656.6
(-3) 		778.1
(-0.4) 		840.1
(0.9) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 477.5
(3)
P 		306.7
(0.5)
P 		333.2
(0.9)
P 		74.2
(-3)
P 		403
B 403.6
(3)
P 		355
(2)
P 		325.7
(1.4)
P 		108.9
(-3)
P 		295
C 392.9
(1.9)
P 		383.9
(1.8)
P 		465.3
(3)
P 		69.4
(-3)
P 		396
avr 424.7
(3) 		348.5
(1.7) 		374.7
(2.1) 		84.2
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 137.7
(-3)
P 		361.7
(3)
P 		161.6
(-2.4)
P 		172.4
(-2.1)
P 		228.4
(-0.6)
P 		223
(-0.7)
P 		224
B 352.3
(3)
P 		305.2
(1.3)
P 		199.8
(-2.6)
P 		189.8
(-3)
P 		302.3
(1.2)
P 		314.7
(1.6)
P 		163
C 388.8
(3)
P 		256.9
(0.1)
P 		200
(-1.1)
P 		115.3
(-3)
P 		269.7
(0.4)
P 		254.6
(0.1)
P 		274
avr 292.9
(2.4) 		307.9
(3) 		187.1
(-1.9) 		159.2
(-3) 		266.8
(1.3) 		264.1
(1.2) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4328
Sequence Type Exemplar sequence
Representative Public ID H17B01.4 NCBI
Target Description H17B01.4 /REP_DB=WormBase Gene ID /WP=CE27186 /TR=O44825 /GB=AAK31541.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061579 NCBI Caenorhabditis elegans H17B01.4a (H17B01.4) mRNA, complete cds. 11/11 None
SNAP00000040932 ENSEMBL cdna:SNAP chromosome:CEL140:II:1490132:1500332:-1 11/11 None
GENEFINDER00000040936 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1486727:1500332:-1 11/11 None
H17B01.4a ENSEMBL cdna:known chromosome:CEL140:II:1489905:1500332:-1 gene:H17B01.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173524 2 1 NM_061579 184475_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1490130-1500331(-) 99.77 100.0
Public Domain and Genome References
Ensembl H17B01.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31541 Hypothetical protein H17B01.4a [Caenorhabditis elegans] ref|NP_493980.1| H17B01.4a [Caenorhabditis elegans] 0.0
blast T32814 hypothetical protein H17B01.4 - Caenorhabditis elegans 0.0
blast CAE62887 Hypothetical protein CBG07074 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184475_S_AT
gaaaaactgccgccagtggttgctcagcagagctatatttatgctcaaggagtggatgcg
atgagtgtctcggagacagaacaaggcctgacaactcgatcaatccttgtcgcacaccca
tccggaaacatccatgaagtctcgcgacgcctcctcgacgcgaatcgaccaatggagctg
acccaagcgatgcgtgaggagatgatgattggttacatgccggaaatcgccgtagccacc
gaagaaatgatcaactacaatcagacggtccaccgagtccgtggcatcaaaacaagcccg
tcgggcttggaatccacgtcacttgtgttggcctacgggacggatttgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAACTGCCGCCAGTGGTTGCTC 332 355 2503 Antisense
CAACTCGATCAATCCTTGTCGCACA 614 187 2594 Antisense
GAAACATCCATGAAGTCTCGCGACG 8 357 2627 Antisense
CTCCTCGACGCGAATCGACCAATGG 675 233 2653 Antisense
GCTGACCCAAGCGATGCGTGAGGAG 568 295 2679 Antisense
TACATGCCGGAAATCGCCGTAGCCA 1 645 2716 Antisense
TCAACTACAATCAGACGGTCCACCG 86 631 2753 Antisense
GTCCACCGAGTCCGTGGCATCAAAA 100 475 2770 Antisense
GGCATCAAAACAAGCCCGTCGGGCT 162 535 2785 Antisense
GGAATCCACGTCACTTGTGTTGGCC 449 531 2811 Antisense
TTGGCCTACGGGACGGATTTGTTCT 509 705 2830 Antisense
Sequence Source Affymetrix Proprietary Database