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[184474_at] 7TM chemoreceptor, srx family

Description C46E10.6 /REP_DB=WormBase Gene ID /WP=CE08764 /TR=O44713 /GB=AAB96691.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 26      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 29.8
(-3)
A 		76.6
(3)
A 		52.1
(-0.1)
A 		68.5
(2)
A 		47
B 26.3
(-3)
A 		59.2
(2.7)
A 		38
(-1)
A 		61.1
(3)
A 		35
C 32.1
(-2.5)
A 		80.3
(1)
A 		24.8
(-3)
A 		109.1
(3)
P 		84
avr 29.4
(-3) 		72
(2.1) 		38.3
(-1.9) 		79.6
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 47.2
(2.5)
A 		27.2
(-0.1)
A 		45.8
(2.3)
A 		4.7
(-3)
A 		51.2
(3)
A 		33
(0.7)
A 		47
B 21.5
(-2.9)
A 		21
(-3)
A 		42.7
(3)
A 		24.2
(-2.1)
A 		22.9
(-2.5)
A 		22.5
(-2.6)
A 		22
C 33.3
(2.2)
A 		21
(0.1)
A 		32.7
(2.1)
A 		2.5
(-3)
A 		37.8
(3)
A 		24.2
(0.7)
A 		35
avr 34
(1.7) 		23.1
(-0.5) 		40.4
(3) 		10.5
(-3) 		37.3
(2.4) 		26.6
(0.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.8
(-2.3)
A 		16.6
(3)
A 		13.6
(0.3)
A 		10
(-3)
A 		7
B 8.4
(-3)
A 		14.6
(3)
A 		8.8
(-2.6)
A 		13
(1.5)
A 		6
C 10.6
(-2.2)
A 		23.1
(3)
A 		8.7
(-3)
A 		18.4
(1)
P 		14
avr 9.9
(-3) 		18.1
(3) 		10.4
(-2.6) 		13.8
(-0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.7
(0.1)
A 		9.7
(0.6)
A 		10
(0.7)
A 		1.2
(-3)
A 		15.5
(3)
A 		8
(-0.1)
A 		14
B 7.5
(-1.4)
A 		7
(-2.1)
A 		10.4
(3)
A 		6.4
(-3)
A 		9.3
(1.4)
A 		8.4
(0)
A 		4
C 12.3
(3)
A 		6.4
(0)
A 		8.3
(1)
A 		0.5
(-3)
A 		12.2
(2.9)
A 		8.1
(0.9)
A 		12
avr 9.5
(1.3) 		7.7
(0.1) 		9.6
(1.3) 		2.7
(-3) 		12.3
(3) 		8.2
(0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4131
Sequence Type Exemplar sequence
Representative Public ID C46E10.6 NCBI
Target Description C46E10.6 /REP_DB=WormBase Gene ID /WP=CE08764 /TR=O44713 /GB=AAB96691.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062223 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-110) (srx-110) mRNA, complete cds. 11/11 None
GENEFINDER00000007044 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3709564:3710946:1 11/11 None
C46E10.6 ENSEMBL cdna:known chromosome:CEL140:II:3709549:3710946:1 gene:C46E10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007032 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3709547-3710945(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-110
Ensembl C46E10.6
Entrez Gene 183508 Entrez gene
SwissProt O44713 EMBL-EBI
WormBase CE08764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-170
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-167
blast AAF39802 Serpentine receptor, class x protein 108 [Caenorhabditis elegans] ref|NP_494622.1| Serpentine Receptor, class X family member (srx-108) [Caenorhabditis elegans] 1.0E-128
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 6.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494624.1 6 15-37,57-79,94-116,128-150,177-199,260-282
C46E10.6 6 15-37,57-79,94-116,128-150,177-199,260-282
GENEFINDER00000007044 6 10-32,52-74,89-111,123-145,172-194,255-277
Sequence
Target Sequence 
>C. ELEGANS:184474_AT
gctttcttgtggtatggtgttccccggttaacactccaaggtacagtacccggattacag
tagccgcaatggcaatatcatggcttttcacagtttggttttctactctaattggaatgc
cagacatctgccgtttcccgttcagcttcgaccatgtaccgtttcccgactattcagaaa
atgactatcaatgcgttgaggctttgataagcttcctgatatattatttattagtattgg
cagtttctacaaatttcatgaatatcctgatagctatcaagttattctgtctttcgaaat
cttccaaatccctctcctctgagtccgctaaaagtcggcggaggtctaacatcagattct
ttctccaatcatgcttccaagattggatttgcatggtcgacgtggcggttaaccatttat
ccctagaatactgtgagatgaatgtctgtgcggtgctcgtcagtatggggtttgatgtga
tggtatatgtagttgatggattgataatgtatctcttcaactatcgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTCTTGTGGTATGGTGTTCCCC 178 305 341 Antisense
GGCAATATCATGGCTTTTCACAGTT 138 535 411 Antisense
TGGAATGCCAGACATCTGCCGTTTC 249 547 453 Antisense
GTTATTCTGTCTTTCGAAATCTTCC 281 447 621 Antisense
TCTCCTCTGAGTCCGCTAAAAGTCG 318 609 653 Antisense
AAGTCGGCGGAGGTCTAACATCAGA 201 155 672 Antisense
CAGATTCTTTCTCCAATCATGCTTC 179 207 693 Antisense
ATTTGCATGGTCGACGTGGCGGTTA 529 17 727 Antisense
GTGGCGGTTAACCATTTATCCCTAG 85 489 742 Antisense
GAGATGAATGTCTGTGCGGTGCTCG 158 397 775 Antisense
AATGTATCTCTTCAACTATCGCATA 190 165 846 Antisense
Sequence Source Affymetrix Proprietary Database