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[184472_s_at]

Description F01F1.11 /REP_DB=WormBase Gene ID /WP=CE26883 /TR=Q19090 /GB=AAK67222.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 65      6grp_total > 50      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 891
1 2 3 4 range
A 1075.9
(-2.8)
P 		1507.3
(0.2)
P 		1907.2
(3)
P 		1051.4
(-3)
P 		856
B 1211
(-2.7)
P 		1684.7
(1.5)
P 		1862.4
(3)
P 		1171.5
(-3)
P 		691
C 1016.7
(-3)
P 		1612.8
(2.5)
P 		1668
(3)
P 		1070
(-2.5)
P 		651
avr 1101.2
(-3) 		1601.6
(1.2) 		1812.5
(3) 		1097.6
(-3) 		715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 1326.9
(3)
P 		983.9
(-3)
P 		1255.8
(1.8)
P 		1249.9
(1.7)
P 		1073.9
(-1.4)
P 		1069.8
(-1.5)
P 		343
B 1221.5
(-0.2)
P 		1077.2
(-2.5)
P 		1421.8
(3)
P 		1246.4
(0.2)
P 		1047.8
(-3)
P 		1145.1
(-1.4)
P 		374
C 1118.4
(-1.5)
P 		1060
(-2.6)
P 		1339.4
(2.8)
P 		1349.9
(3)
P 		1038.5
(-3)
P 		1114.7
(-1.5)
P 		311
avr 1222.3
(0.7) 		1040.4
(-3) 		1339
(3) 		1282.1
(1.9) 		1053.4
(-2.7) 		1109.9
(-1.6) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 391.7
(1.1)
P 		327.2
(0)
P 		498.6
(3)
P 		153.9
(-3)
P 		345
B 386.2
(1.5)
P 		416.1
(2.5)
P 		431.6
(3)
P 		249.6
(-3)
P 		182
C 336.5
(-0.7)
P 		463.7
(1.2)
P 		581.3
(3)
P 		180.4
(-3)
P 		401
avr 371.5
(0.4) 		402.3
(1) 		503.8
(3) 		194.6
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 244.6
(-3)
P 		349.9
(3)
P 		273.5
(-1.4)
P 		317
(1.1)
P 		324.1
(1.5)
P 		260.5
(-2.1)
P 		105
B 425
(2.9)
P 		358.5
(-1.2)
P 		345.2
(-2.1)
P 		330.1
(-3)
P 		425.7
(2.9)
P 		427
(3)
P 		97
C 414.5
(3)
P 		323.4
(-0.8)
P 		340.9
(-0.1)
P 		271.5
(-3)
P 		336
(-0.3)
P 		373.1
(1.3)
P 		143
avr 361.4
(2.9) 		343.9
(1.1) 		319.9
(-1.5) 		306.2
(-3) 		361.9
(3) 		353.5
(2.1) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184472_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6189
Sequence Type Exemplar sequence
Representative Public ID F01F1.11 NCBI
Target Description F01F1.11 /REP_DB=WormBase Gene ID /WP=CE26883 /TR=Q19090 /GB=AAK67222.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065867 NCBI Caenorhabditis elegans F01F1.15 (F01F1.15) mRNA, complete cds. 11/11 None
SNAP00000009924 ENSEMBL cdna:SNAP chromosome:CEL140:III:5868675:5869478:-1 11/11 None
GENEFINDER00000009932 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5868675:5869478:-1 11/11 None
F01F1.15.1 ENSEMBL cdna:known chromosome:CEL140:III:5868545:5869479:-1 gene:F01F1.15 11/11 None
F01F1.15.2 ENSEMBL cdna:known chromosome:CEL140:III:5868545:5869570:-1 gene:F01F1.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5868673-5871735(-) 99.89 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.15
Entrez Gene 175824 Entrez gene
SwissProt Q95QN1 EMBL-EBI
WormBase CE26884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67223 Hypothetical protein F01F1.15 [Caenorhabditis elegans] ref|NP_498268.1| F01F1.15 [Caenorhabditis elegans] 1.0E-108
blast T15949 hypothetical protein F01F1.11 - Caenorhabditis elegans 1.0E-108
blast AAK67223 Hypothetical protein F01F1.15 [Caenorhabditis elegans] ref|NP_498268.1| F01F1.15 [Caenorhabditis elegans] 1.0E-104
blast T15949 hypothetical protein F01F1.11 - Caenorhabditis elegans 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:184472_S_AT
cactggtttgtctcatatcactgtcgggtattcaatctgcatcggtttcttcattagagt
gtggagcctgctccctcctcgtaacccatttcgagctgaaaatcgccgcagtcgacccga
aaaagaaaatcgaagttggaagtttccgagtttcaccaactggagatcaaaaagggctca
aggaaatcggctatgctcgttcagaatctcatttgacagaaatcattgagcacgcttgtg
atgatgcgaaacactataaacttgtggtgaatacaattactggaaaatcagtctacgttc
acaacgacgccacacatttgaaaggagatgagtctcccaaaatgagatataatcttcaaa
acgcttgcaacgacttcattgactctcacgaagatgagcttcttggtttcctgaagaccg
cccatcaggatcccgtcaaacagttctgccaaggagaaatgggtgcttgcactgctgtcg
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGGTTTGTCTCATATCACTGTC 659 197 1190 Antisense
ATCACTGTCGGGTATTCAATCTGCA 641 25 1206 Antisense
CAATCTGCATCGGTTTCTTCATTAG 265 181 1222 Antisense
TTAGAGTGTGGAGCCTGCTCCCTCC 641 681 1243 Antisense
CGAGCTGAAAATCGCCGCAGTCGAC 620 249 1281 Antisense
AATCGGCTATGCTCGTTCAGAATCT 646 167 1374 Antisense
TCAGTCTACGTTCACAACGACGCCA 708 623 1477 Antisense
TGCAACGACTTCATTGACTCTCACG 330 575 1555 Antisense
GAGCTTCTTGGTTTCCTGAAGACCG 209 389 1585 Antisense
CAGGATCCCGTCAAACAGTTCTGCC 325 209 1615 Antisense
AATGGGTGCTTGCACTGCTGTCGAT 356 163 1647 Antisense
Sequence Source Affymetrix Proprietary Database