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[184471_at]

Description F46F11.8 /REP_DB=WormBase Gene ID /WP=CE26921 /TR=P91308 /GB=AAK21390.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 83      6grp_total > 74      4grp_total > 32      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 107.8
(-3)
P 		110.4
(-2.7)
A 		164.1
(3)
M 		144.8
(0.9)
P 		56
B 84.3
(-3)
P 		101.9
(-0)
A 		119.6
(3)
A 		113.9
(2)
P 		35
C 107.1
(-3)
A 		129
(1)
A 		140.1
(3)
P 		131.1
(1.4)
P 		33
avr 99.7
(-3) 		113.8
(-1) 		141.3
(3) 		129.9
(1.4) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 199.4
(0.8)
M 		158.4
(-3)
P 		185.5
(-0.5)
P 		179.1
(-1.1)
P 		223.5
(3)
P 		160.9
(-2.8)
P 		65
B 77.3
(-2.7)
P 		67.8
(-3)
P 		241.8
(2.9)
P 		245.6
(3)
P 		162.9
(0.2)
P 		222.5
(2.2)
P 		178
C 130.5
(-3)
P 		160.1
(-1.5)
M 		234.4
(2.2)
P 		245.2
(2.7)
P 		176
(-0.7)
P 		250.2
(3)
P 		120
avr 135.7
(-2.6) 		128.8
(-3) 		220.6
(2.8) 		223.3
(3) 		187.5
(0.7) 		211.2
(2.2) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 39.2
(2)
P 		24
(-2.2)
A 		42.9
(3)
M 		21.2
(-3)
P 		22
B 26.9
(1.6)
P 		25.2
(-1.4)
A 		27.7
(3)
A 		24.3
(-3)
P 		3
C 35.5
(0)
A 		37.1
(0.4)
A 		48.8
(3)
P 		22.1
(-3)
P 		27
avr 33.9
(1) 		28.8
(-0.8) 		39.8
(3) 		22.5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 36.8
(-3)
M 		56.3
(0.8)
P 		40.4
(-2.3)
P 		45.4
(-1.3)
P 		67.4
(3)
P 		39.2
(-2.5)
P 		31
B 26.9
(-2.6)
P 		22.6
(-3)
P 		58.7
(0.6)
P 		65
(1.2)
P 		66.2
(1.3)
P 		83
(3)
P 		60
C 48.4
(-3)
P 		48.9
(-2.9)
M 		59.6
(-1.1)
P 		49.3
(-2.8)
P 		57
(-1.5)
P 		83.8
(3)
P 		35
avr 37.4
(-3) 		42.6
(-2) 		52.9
(-0) 		53.2
(0) 		63.5
(2) 		68.7
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.883
Sequence Type Exemplar sequence
Representative Public ID F46F11.8 NCBI
Target Description F46F11.8 /REP_DB=WormBase Gene ID /WP=CE26921 /TR=P91308 /GB=AAK21390.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059246(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059246 NCBI Caenorhabditis elegans F46F11.10 (F46F11.10) mRNA, complete cds. 9/11 None
SNAP00000023451 ENSEMBL cdna:SNAP chromosome:CEL140:I:5623147:5624178:-1 10/11 None
GENEFINDER00000023457 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5623147:5624478:-1 10/11 None
F46F11.10 ENSEMBL cdna:known chromosome:CEL140:I:5623147:5624478:-1 gene:F46F11.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5621440-5626077(-) 99.74 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F11.10
Entrez Gene 259376 Entrez gene
WormBase CE39100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491647 F46F11.10 [Caenorhabditis elegans] 0.0
blast AAK21389 Hypothetical protein F46F11.10 [Caenorhabditis elegans] 0.0
blast T25769 hypothetical protein F46F11.8 - Caenorhabditis elegans 0.0
blast AAK21389 Hypothetical protein F46F11.10 [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 8.8E-68
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 8.8E-68
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 8.9E-70
Sequence
Target Sequence 
>C. ELEGANS:184471_AT
gaaaatcgacgaaaccccgatccatttcgccttcattttgtaaattatgatagtaaaaat
tcgagtattcaagatttggagaagtcaaaattacaaagcattcggaaatcacacgttttt
aatcctattgtcactgaaaatggattagaaacatacgagaatcactccaaaaatgtcatt
tatctatcaccggatgctacagaagaattagaatctgtggatgatgataaaatttatgta
atcggaggaatcgtggatcgtgtaccagaaccaggaatcccaaagcatgcatcgcttgaa
gcatcacaatctgcaggagtatttgcccgaaaacttccaattgatcgatatgtggatttc
aagtctggatctaaatttttgactcttcttgccgtggctgaaattctacgccaggttaat
atccacggcgattggaagaaggcgatgaaagtggcgatccctgtgagaaatacgagagga
gctgacgagaagaatccaaaagcacgtgctgcacagttacggattcatgcttttaatcag
gaaattttaaagcgaatcgatagaagatccccttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCGACGAAACCCCGATCCAT 625 351 1672 Antisense
CACGTTTTTAATCCTATTGTCACTG 344 199 1783 Antisense
GTCATTTATCTATCACCGGATGCTA 602 467 1846 Antisense
GAATCGTGGATCGTGTACCAGAACC 419 325 1919 Antisense
CCAGGAATCCCAAAGCATGCATCGC 233 271 1942 Antisense
GAGTATTTGCCCGAAAACTTCCAAT 634 397 1988 Antisense
TGACTCTTCTTGCCGTGGCTGAAAT 100 569 2051 Antisense
ATTCTACGCCAGGTTAATATCCACG 283 9 2074 Antisense
GTGGCGATCCCTGTGAGAAATACGA 587 491 2122 Antisense
GCACGTGCTGCACAGTTACGGATTC 244 315 2173 Antisense
GAATCGATAGAAGATCCCCTTTTCG 583 325 2225 Antisense
Sequence Source Affymetrix Proprietary Database